Factsheet for TraesCS4D01G104900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G204000.2	Wheat	cytosol	93.73	85.79
Zm00001d049042_P001	Maize	extracellular	84.2	84.2
KXG28235	Sorghum	cytosol	83.92	83.92
Os11t0216900-02	Rice	cytosol	82.29	80.75
HORVU4Hr1G016410.7	Barley	cytosol	87.47	76.25
TraesCS4B01G107800.1	Wheat	cytosol	92.37	74.83
GSMUA_Achr6P29170_001	Banana	cytosol	73.3	69.87
VIT_11s0016g00830.t01	Wine grape	cytosol	68.94	67.29
PGSC0003DMT400064893	Potato	cytosol	68.12	66.84
Solyc08g022210.2.1	Tomato	cytosol, plastid	67.57	66.31
Bra015169.1-P	Field mustard	cytosol	65.4	64.52
CDY33397	Canola	cytosol	65.4	64.34
CDY70356	Canola	cytosol	65.12	64.08
AT2G05830.1	Thale cress	cytosol	64.58	63.37
KRH12557	Soybean	nucleus	33.24	62.24
KRH37507	Soybean	cytosol	60.76	59.63
VIT_17s0053g00580.t01	Wine grape	cytosol	8.99	45.21
CDY09484	Canola	cytosol	9.54	39.33
CDY04295	Canola	mitochondrion	19.07	29.41

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1840	Gene3D:3.40.50.10470	MapMan:4.1.2.2.6.4.3	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0044237	GO:GO:0044249	InterPro:IF-2B-related	InterPro:IF-M1Pi
InterPro:Initiation_fac_2B_a/b/d	HAMAP:MF_01678	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR43475	PANTHER:PTHR43475:SF1
SUPFAM:SSF100950	TIGRFAMs:TIGR00512	TIGRFAMs:TIGR00524	EnsemblPlantsGene:TraesCS4D01G104900	EnsemblPlants:TraesCS4D01G104900.1	SEG:seg

Description

No Description!

Coordinates

chr4D:+:83134259..83138441

Molecular Weight (calculated)

38637.0 Da

IEP (calculated)

5.922

GRAVY (calculated)

0.068

Length

367 amino acids

Sequence
(BLAST)

001: MGESSALQSI LYGRGALRLL DQRKLPLEEV YIDVKDSADG WNAIRDMVVR GAPAIAIAAA LSLAVEVNDH DFTGTPVEAA SFVSKKLEYL VSSRPTAVNL
101: SDAATKLQNL VSRTAETAKD AKSIFQVFIE AAEAMLVDDV ADNKAIGSHG AEFLQRQLGS SRNISVLTHC NTGSLATAGY GTALGVIRAL HSGGVLEKAF
201: CTETRPFNQG SRLTAFELVH DKIPATLIAD SAAAALMNNG QVQAVIVGAD RIAANGDTAN KIGTYNLSIS AKHHGMQFYV AAPVTSIDLS LPSGKQIVIE
301: ERSPKELLNS EGGLGKQVAA SGISVWNPAF DVTPANLITA IITEKGVITK SDPNGSFDIK GFIECAK

Best Arabidopsis Sequence Match ( AT2G05830.1 )
(BLAST)

001: MSGEGDTTLK AICYKPGSLQ LLDQRKLPLE TIYLEIRDAS DGWSAIQEMV VRGAPAIAIA AALSLAVEVF NFHGFDGSAS DAVAFLENKL DYLVSSRPTA
101: VNLADAALKL KHVIAKALAT ATEAKSIFKA YIEASEDMLE DDVVSNKAIG NFGLSLLRQQ AKNPDKLSVL THCNTGSLAT AGYGTALGVI RALHTQGILE
201: RAYCTETRPF NQGSRLTAFE LVHEKIPATL IADSAAAALM KDGRVDGVIV GADRVASNGD TANKIGTYSL ALCAKHHGIP FYVAAPLTSV DLSLSSGKEI
301: VIEERSPKEL MHTHGGLGER IAAPGISVWN PAFDMTPAEL IAGIITEKGV ITKNGNDTFD ISSFAKKITG NSSR

Arabidopsis Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.