CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015169.1-P	Field mustard	cytosol	98.66	98.92
CDY33397	Canola	cytosol	98.66	98.66
AT2G05830.1	Thale cress	cytosol	90.88	90.64
PGSC0003DMT400064893	Potato	cytosol	75.07	74.87
Solyc08g022210.2.1	Tomato	cytosol, plastid	73.73	73.53
VIT_11s0016g00830.t01	Wine grape	cytosol	72.12	71.54
KRH37507	Soybean	cytosol	69.17	68.98
Zm00001d049042_P001	Maize	extracellular	67.56	68.66
KXG28235	Sorghum	cytosol	67.56	68.66
KRH12557	Soybean	nucleus	35.92	68.37
TraesCS4D01G104900.1	Wheat	cytosol	64.08	65.12
GSMUA_Achr6P29170_001	Banana	cytosol	66.76	64.68
TraesCS4A01G204000.2	Wheat	cytosol	66.76	62.09
HORVU4Hr1G016410.7	Barley	cytosol	64.88	57.48
CDY09484	Canola	cytosol	13.67	57.3
TraesCS4B01G107800.1	Wheat	cytosol	65.95	54.3
VIT_17s0053g00580.t01	Wine grape	cytosol	9.65	49.32
CDY04295	Canola	mitochondrion	28.42	44.54
Os11t0217300-01	Rice	cytosol, plasma membrane	13.67	14.45

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1840	Gene3D:3.40.50.10470	MapMan:4.1.2.2.6.4.3	GO:A0A078JY24	UniProt:A0A078JY24
EnsemblPlants:CDY70356	ProteinID:CDY70356	ProteinID:CDY70356.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009086	GO:GO:0009987	GO:GO:0016853
GO:GO:0019284	GO:GO:0019509	GO:GO:0044237	GO:GO:0044249	GO:GO:0046523	EnsemblPlantsGene:GSBRNA2T00098221001
InterPro:IF-2B-related	InterPro:IF-M1Pi	InterPro:Initiation_fac_2B_a/b/d	HAMAP:MF_01678	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008
PANTHER:PTHR43475	PANTHER:PTHR43475:SF1	MetaCyc:PWY-4361	MetaCyc:PWY-7174	SUPFAM:SSF100950	TIGRFAMs:TIGR00512
TIGRFAMs:TIGR00524	UniPathway:UPA00904	UniParc:UPI0004EE3E9B	SEG:seg	:	:

Description

BnaCnng67980DMethylthioribose-1-phosphate isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078JY24]

Coordinates

chrLK041860:+:405..2783

Molecular Weight (calculated)

39168.6 Da

IEP (calculated)

5.445

GRAVY (calculated)

0.056

Length

373 amino acids

Sequence
(BLAST)

001: MSGEGDTTLK SICYKPGSLQ LLDQQRKLPL ETTYLEIRDT ADGWSAIQEM VVRGAPAIAI AAALSLAVEV SNFSGFDGSS AEAVAFLEKK LDYLVSSRPT
101: AVNLADASLK LKQVIANALA SSAAEPNSIF KAYIEAAENM LEDDVASNKA IGTFGSSLLR QQAKNPDKLS VLTHCNTGSL ATAGYGTALG VIRALHTQGV
201: LERAYCTETR PFNQGSRLTA FELVHEKIPA TLIADSAAAA LMKDGRVDGV VVGADRVASN GDTANKIGTY SLALCAKHHG IPFYVAAPLT SVDLSLSSGK
301: EIVIEERTAK ELLNTHGGLG ERIAAPGISV WNPAFDVTPA ELIAGIITEK GVITKNANDA FDISSFAKKV TGN

Best Arabidopsis Sequence Match ( AT2G05830.1 )
(BLAST)

001: MSGEGDTTLK AICYKPGSLQ LLDQRKLPLE TIYLEIRDAS DGWSAIQEMV VRGAPAIAIA AALSLAVEVF NFHGFDGSAS DAVAFLENKL DYLVSSRPTA
101: VNLADAALKL KHVIAKALAT ATEAKSIFKA YIEASEDMLE DDVVSNKAIG NFGLSLLRQQ AKNPDKLSVL THCNTGSLAT AGYGTALGVI RALHTQGILE
201: RAYCTETRPF NQGSRLTAFE LVHEKIPATL IADSAAAALM KDGRVDGVIV GADRVASNGD TANKIGTYSL ALCAKHHGIP FYVAAPLTSV DLSLSSGKEI
301: VIEERSPKEL MHTHGGLGER IAAPGISVWN PAFDMTPAEL IAGIITEKGV ITKNGNDTFD ISSFAKKITG NSSR

Arabidopsis Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.