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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 5
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY09484 Canola cytosol 20.17 53.93
VIT_17s0053g00580.t01 Wine grape cytosol 8.82 28.77
CDY70356 Canola cytosol 44.54 28.42
CDY33397 Canola cytosol 43.7 27.88
AT2G05830.1 Thale cress cytosol 40.34 25.67
KRH37507 Soybean cytosol 33.19 21.12
VIT_11s0016g00830.t01 Wine grape cytosol 32.35 20.48
Solyc08g022210.2.1 Tomato cytosol, plastid 31.93 20.32
PGSC0003DMT400064893 Potato cytosol 31.93 20.32
Zm00001d049042_P001 Maize extracellular 31.09 20.16
KXG28235 Sorghum cytosol 30.67 19.89
GSMUA_Achr6P29170_001 Banana cytosol 31.51 19.48
TraesCS4D01G104900.1 Wheat cytosol 29.41 19.07
TraesCS4A01G204000.2 Wheat cytosol 29.83 17.71
HORVU4Hr1G016410.7 Barley cytosol 31.09 17.58
TraesCS4B01G107800.1 Wheat cytosol 32.77 17.22
KRH12557 Soybean nucleus 10.92 13.27
Os11t0217300-01 Rice cytosol, plasma membrane 7.98 5.38
Protein Annotations
EnsemblPlants:CDY04295EnsemblPlantsGene:GSBRNA2T00118062001Gene3D:1.20.120.1840GO:A0A078EQR0GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0044237InterPro:IF-2B-relatedInterPro:NagB/RpiA_transferase-likeKEGG:00270+5.3.1.23MetaCyc:PWY-4361
MetaCyc:PWY-7174PANTHER:PTHR43475PANTHER:PTHR43475:SF1PFAM:PF01008ProteinID:CDY04295ProteinID:CDY04295.1
SEG:segSUPFAM:SSF100950UniParc:UPI0004EEF532UniPathway:UPA00904MapMan:4.1.2.2.6.4.3:
Description
BnaC06g25200D
Coordinates
chrLK031950:+:1112253..1114101
Molecular Weight (calculated)
27098.3 Da
IEP (calculated)
10.539
GRAVY (calculated)
-0.180
Length
238 amino acids
Sequence
(BLAST)
001: MKSPRSNFLL LATLRRRTRV RLRKRVGMNG LRLILMRIWK IWMRMMRRRV LVKNMDEDDD IEFELDPTCC LMCHKKHKTI EKCMVHMQLT PKELSRISNS
101: FARRAIISTL SNHAIAIAAA LSLAVEVSNF SDFDGSSADA VAFLEKKLDY LVSSRPTAVN LADAALKLKQ LFCFSAENMF EDDVASNKAI GTFGSSLMRQ
201: QAKNPDKLSV LTHCNTGRKD STRSYIPVNI DLIQIKSQ
Best Arabidopsis Sequence Match ( AT2G05830.2 )
(BLAST)
001: MVVRGAPAIA IAAALSLAVE VFNFHGFDGS ASDAVAFLEN KLDYLVSSRP TAVNLADAAL KLKHVIAKAL ATATEAKSIF KAYIEASEDM LEDDVVSNKA
101: IGNFGLSLLR QQAKNPDKLS VLTHCNTGSL ATAGYGTALG VIRALHTQGI LERAYCTETR PFNQGSRLTA FELVHEKIPA TLIADSAAAA LMKDGRVDGV
201: IVGADRVASN GDTANKIGTY SLALCAKHHG IPFYVAAPLT SVDLSLSSGK EIVIEERSPK ELMHTHGGLG ERIAAPGISV WNPAFDMTPA ELIAGIITEK
301: GVITKNGNDT FDISSFAKKI TGNSSR
Arabidopsis Description
Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.