Factsheet for GSMUA_Achr6P29170_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28235	Sorghum	cytosol	73.51	77.11
Zm00001d049042_P001	Maize	extracellular	73.51	77.11
Os11t0216900-02	Rice	cytosol	74.29	76.47
TraesCS4D01G104900.1	Wheat	cytosol	69.87	73.3
TraesCS4A01G204000.2	Wheat	cytosol	73.77	70.82
VIT_11s0016g00830.t01	Wine grape	cytosol	68.57	70.21
PGSC0003DMT400064893	Potato	cytosol	67.79	69.79
Solyc08g022210.2.1	Tomato	cytosol, plastid	67.27	69.25
CDY33397	Canola	cytosol	64.68	66.76
CDY70356	Canola	cytosol	64.68	66.76
Bra015169.1-P	Field mustard	cytosol	64.42	66.67
AT2G05830.1	Thale cress	cytosol	64.42	66.31
HORVU4Hr1G016410.7	Barley	cytosol	71.69	65.56
KRH37507	Soybean	cytosol	61.82	63.64
TraesCS4B01G107800.1	Wheat	cytosol	73.77	62.69
KRH12557	Soybean	nucleus	31.43	61.73
VIT_17s0053g00580.t01	Wine grape	cytosol	8.05	42.47
CDY09484	Canola	cytosol	9.35	40.45
CDY04295	Canola	mitochondrion	19.48	31.51

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1840	Gene3D:3.40.50.10470	MapMan:4.1.2.2.6.4.3	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009086
GO:GO:0009506	GO:GO:0009719	GO:GO:0009987	GO:GO:0016853	GO:GO:0019284	GO:GO:0019509
GO:GO:0044237	GO:GO:0044249	GO:GO:0046523	GO:GO:0071281	GO:GO:0071369	GO:GO:0071732
EnsemblPlantsGene:GSMUA_Achr6G29170_001	EnsemblPlants:GSMUA_Achr6P29170_001	EnsemblPlants:GSMUA_Achr6T29170_001	InterPro:IF-2B-related	InterPro:IF-M1Pi	InterPro:Initiation_fac_2B_a/b/d
UniProt:M0TB62	HAMAP:MF_01678	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR43475	PANTHER:PTHR43475:SF1
SUPFAM:SSF100950	TIGRFAMs:TIGR00512	TIGRFAMs:TIGR00524	UniParc:UPI0002961CB1	SEG:seg	:

Description

Methylthioribose-1-phosphate isomerase [Source:GMGC_GENE;Acc:GSMUA_Achr6G29170_001]

Coordinates

chr6:-:29451684..29457558

Molecular Weight (calculated)

40735.6 Da

IEP (calculated)

6.180

GRAVY (calculated)

0.124

Length

385 amino acids

Sequence
(BLAST)

001: MSAEANGSSA AATTAGGSLQ SICYERGSLR LLDQRKLPLE TVYLDVKDST DGWTAIRDMV VRGAPAIAIA AALSLAVEVW NLDFNGTSED ASSLLIKKLE
101: YLVSSRPTAV NLSDAVEKLR SLVLKTVETA TEAKTVFQAY IDAAETMLID DVASNKAIGF HGAKHLRSNL DSLEKISVLT HCNTGSLATA GYGTALGVIR
201: ALRSEGFLEK AFCTETRPFN QARCSTTGSR LTAFELVHDR IPATLIADSA VAALMKAGCV NAVIVGADRI AANGDTANKI GTYNVALSAF HHGIQFYVAA
301: PITSIDLSIS SGEQIVIEER SAKELLHSDG GRGKQVAASG ISVWNPAFDV TPARLITAII TEKGVIIKKA SDEAFDIKGF IENAK

Best Arabidopsis Sequence Match ( AT2G05830.1 )
(BLAST)

001: MSGEGDTTLK AICYKPGSLQ LLDQRKLPLE TIYLEIRDAS DGWSAIQEMV VRGAPAIAIA AALSLAVEVF NFHGFDGSAS DAVAFLENKL DYLVSSRPTA
101: VNLADAALKL KHVIAKALAT ATEAKSIFKA YIEASEDMLE DDVVSNKAIG NFGLSLLRQQ AKNPDKLSVL THCNTGSLAT AGYGTALGVI RALHTQGILE
201: RAYCTETRPF NQGSRLTAFE LVHEKIPATL IADSAAAALM KDGRVDGVIV GADRVASNGD TANKIGTYSL ALCAKHHGIP FYVAAPLTSV DLSLSSGKEI
301: VIEERSPKEL MHTHGGLGER IAAPGISVWN PAFDMTPAEL IAGIITEKGV ITKNGNDTFD ISSFAKKITG NSSR

Arabidopsis Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.