Factsheet for Bra015169.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33397	Canola	cytosol	99.73	99.46
CDY70356	Canola	cytosol	98.92	98.66
AT2G05830.1	Thale cress	cytosol	92.2	91.71
PGSC0003DMT400064893	Potato	cytosol	75.27	74.87
Solyc08g022210.2.1	Tomato	cytosol, plastid	73.92	73.53
VIT_11s0016g00830.t01	Wine grape	cytosol	72.85	72.07
KRH37507	Soybean	cytosol	69.09	68.72
Zm00001d049042_P001	Maize	extracellular	67.74	68.66
KXG28235	Sorghum	cytosol	67.74	68.66
KRH12557	Soybean	nucleus	36.02	68.37
TraesCS4D01G104900.1	Wheat	cytosol	64.52	65.4
GSMUA_Achr6P29170_001	Banana	cytosol	66.67	64.42
TraesCS4A01G204000.2	Wheat	cytosol	66.94	62.09
HORVU4Hr1G016410.7	Barley	cytosol	65.32	57.72
TraesCS4B01G107800.1	Wheat	cytosol	66.13	54.3
VIT_17s0053g00580.t01	Wine grape	cytosol	9.68	49.32
Os11t0217300-01	Rice	cytosol, plasma membrane	13.98	14.73

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1840	Gene3D:3.40.50.10470	MapMan:4.1.2.2.6.4.3	EnsemblPlantsGene:Bra015169	EnsemblPlants:Bra015169.1
EnsemblPlants:Bra015169.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009086	GO:GO:0009506	GO:GO:0009719	GO:GO:0009987
GO:GO:0016853	GO:GO:0019284	GO:GO:0019509	GO:GO:0044237	GO:GO:0044249	GO:GO:0046523
GO:GO:0071281	GO:GO:0071369	GO:GO:0071732	InterPro:IF-2B-related	InterPro:IF-M1Pi	InterPro:Initiation_fac_2B_a/b/d
UniProt:M4DF97	HAMAP:MF_01678	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR43475	PANTHER:PTHR43475:SF1
SUPFAM:SSF100950	TIGRFAMs:TIGR00512	TIGRFAMs:TIGR00524	UniParc:UPI000254129D	SEG:seg	:

Description

AT2G05830 (E=3e-179) | eukaryotic translation initiation factor 2B family protein / eIF-2B family protein

Coordinates

chrA07:-:2788984..2791028

Molecular Weight (calculated)

38994.4 Da

IEP (calculated)

5.244

GRAVY (calculated)

0.081

Length

372 amino acids

Sequence
(BLAST)

001: MSGEGDTTLK SICYKPGSLQ LLDQRKLPLE TTYLEIRDAA DGWSAIQEMV VRGAPAIAIA AALSLAVEVS NFSGFDGSSA EAVAFLENKL DYLVSSRPTA
101: VNLADAALKL KQVIANALAS SAAEPNSIFK AYIEAAENML EDDVASNKAI GTFGSSLLRQ QAKNPDKLSV LTHCNTGSLA TAGYGTALGV IRALHTQGVL
201: ERAYCTETRP FNQGSRLTAF ELVHEKIPAT LIADSAAAAL MKDGRVDGVI VGADRVASNG DTANKIGTYS LALCAKHHGI PFYVAAPLTS VDLSLSSGKE
301: IVIEERTAKE LLNTHGGLGE RIAAPGISVW NPAFDVTPAE LIAGIITEKG VITKNANDAF DISSFAKKVT GN

Best Arabidopsis Sequence Match ( AT2G05830.1 )
(BLAST)

001: MSGEGDTTLK AICYKPGSLQ LLDQRKLPLE TIYLEIRDAS DGWSAIQEMV VRGAPAIAIA AALSLAVEVF NFHGFDGSAS DAVAFLENKL DYLVSSRPTA
101: VNLADAALKL KHVIAKALAT ATEAKSIFKA YIEASEDMLE DDVVSNKAIG NFGLSLLRQQ AKNPDKLSVL THCNTGSLAT AGYGTALGVI RALHTQGILE
201: RAYCTETRPF NQGSRLTAFE LVHEKIPATL IADSAAAALM KDGRVDGVIV GADRVASNGD TANKIGTYSL ALCAKHHGIP FYVAAPLTSV DLSLSSGKEI
301: VIEERSPKEL MHTHGGLGER IAAPGISVWN PAFDMTPAEL IAGIITEKGV ITKNGNDTFD ISSFAKKITG NSSR

Arabidopsis Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.