Factsheet for HORVU4Hr1G016410.7

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G104900.1	Wheat	cytosol	76.25	87.47
Zm00001d049042_P001	Maize	extracellular	74.35	85.29
KXG28235	Sorghum	cytosol	73.4	84.2
TraesCS4A01G204000.2	Wheat	cytosol	79.81	83.79
Os11t0216900-02	Rice	cytosol	72.45	81.55
TraesCS4B01G107800.1	Wheat	cytosol	80.05	74.39
GSMUA_Achr6P29170_001	Banana	cytosol	65.56	71.69
VIT_11s0016g00830.t01	Wine grape	cytosol	61.28	68.62
PGSC0003DMT400064893	Potato	cytosol	60.33	67.91
Solyc08g022210.2.1	Tomato	cytosol, plastid	59.62	67.11
Bra015169.1-P	Field mustard	cytosol	57.72	65.32
CDY33397	Canola	cytosol	57.72	65.15
CDY70356	Canola	cytosol	57.48	64.88
AT2G05830.1	Thale cress	cytosol	57.01	64.17
KRH12557	Soybean	nucleus	28.74	61.73
KRH37507	Soybean	cytosol	53.68	60.43
VIT_17s0053g00580.t01	Wine grape	cytosol	8.31	47.95
CDY09484	Canola	cytosol	7.6	35.96
CDY04295	Canola	mitochondrion	17.58	31.09

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1840	Gene3D:3.40.50.10470	MapMan:4.1.2.2.6.4.3	UniProt:A0A287ND92	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009086	GO:GO:0009506	GO:GO:0009719	GO:GO:0009987	GO:GO:0016853	GO:GO:0019284
GO:GO:0019509	GO:GO:0044237	GO:GO:0044249	GO:GO:0046523	GO:GO:0071281	GO:GO:0071369
GO:GO:0071732	EnsemblPlantsGene:HORVU4Hr1G016410	EnsemblPlants:HORVU4Hr1G016410.7	InterPro:IF-2B-related	InterPro:IF-M1Pi	InterPro:Initiation_fac_2B_a/b/d
HAMAP:MF_01678	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR43475	PANTHER:PTHR43475:SF1	SUPFAM:SSF100950
TIGRFAMs:TIGR00512	TIGRFAMs:TIGR00524	UniParc:UPI000B47FC54	SEG:seg	:	:

Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/TrEMBL;Acc:A0A287ND92]

Coordinates

chrchr4H:-:67332876..67336808

Molecular Weight (calculated)

44531.0 Da

IEP (calculated)

7.684

GRAVY (calculated)

-0.069

Length

421 amino acids

Sequence
(BLAST)

001: VKGTCVSLRR GDIHGEGGTR QHKGGDCAVR AAPPLLPHFL HPSRPSFSEF HGQNGRIERA SVHPLRPRRA PPPRSERKLP LEEVYVDVKD SADGWNAIRD
101: MVVRGAPAIA IAAALSLAVE VNDHNFIGTP AEAASFVSKK LEYLVSSRPT AVNLSDAATK LQNLVSTTAE TAKDAKSIFQ VFIEAAETML VDDVADNKAI
201: GLHGAEFLQR QLGSSKNISV LTHCNTGSLA TAGYGTALGV IRALHSGGVL EKAFCTETRP FNQGSRLTAF ELVHDKIPAT LIADSAAAAL MNNGQVQAVI
301: VGADRIAANG DTANKIGTYN LSIAAKHHGV QFYVAAPVTS IDLSLPSGKQ IVIEERSPKE LLNSEGGLGK QVAASGISVW NPAFDVTPAN LITAIITEKG
401: VITKSDPDGT FDIKSFIECA K

Best Arabidopsis Sequence Match ( AT2G05830.1 )
(BLAST)

001: MSGEGDTTLK AICYKPGSLQ LLDQRKLPLE TIYLEIRDAS DGWSAIQEMV VRGAPAIAIA AALSLAVEVF NFHGFDGSAS DAVAFLENKL DYLVSSRPTA
101: VNLADAALKL KHVIAKALAT ATEAKSIFKA YIEASEDMLE DDVVSNKAIG NFGLSLLRQQ AKNPDKLSVL THCNTGSLAT AGYGTALGVI RALHTQGILE
201: RAYCTETRPF NQGSRLTAFE LVHEKIPATL IADSAAAALM KDGRVDGVIV GADRVASNGD TANKIGTYSL ALCAKHHGIP FYVAAPLTSV DLSLSSGKEI
301: VIEERSPKEL MHTHGGLGER IAAPGISVWN PAFDMTPAEL IAGIITEKGV ITKNGNDTFD ISSFAKKITG NSSR

Arabidopsis Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.