CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0053g00580.t01	Wine grape	cytosol	22.47	27.4
CDY04295	Canola	mitochondrion	53.93	20.17
KRH12557	Soybean	nucleus	32.58	14.8
CDY33397	Canola	cytosol	57.3	13.67
CDY70356	Canola	cytosol	57.3	13.67
AT2G05830.1	Thale cress	cytosol	52.81	12.57
KRH37507	Soybean	cytosol	42.7	10.16
KXG28235	Sorghum	cytosol	40.45	9.81
Zm00001d049042_P001	Maize	extracellular	39.33	9.54
TraesCS4D01G104900.1	Wheat	cytosol	39.33	9.54
GSMUA_Achr6P29170_001	Banana	cytosol	40.45	9.35
PGSC0003DMT400064893	Potato	cytosol	38.2	9.09
Solyc08g022210.2.1	Tomato	cytosol, plastid	37.08	8.82
TraesCS4A01G204000.2	Wheat	cytosol	39.33	8.73
VIT_11s0016g00830.t01	Wine grape	cytosol	35.96	8.51
HORVU4Hr1G016410.7	Barley	cytosol	35.96	7.6
TraesCS4B01G107800.1	Wheat	cytosol	37.08	7.28
Os11t0217300-01	Rice	cytosol, plasma membrane	10.11	2.55

Protein Annotations

EnsemblPlants:CDY09484	EnsemblPlantsGene:GSBRNA2T00031023001	Gene3D:1.20.120.1840	InterPro:NagB/RpiA_transferase-like	InterPro:RHD3/Sey1	KEGG:00270+5.3.1.23
MetaCyc:PWY-4361	MetaCyc:PWY-7174	PFAM:PF05879	ProteinID:CDY09484	ProteinID:CDY09484.1	SUPFAM:SSF100950
UniParc:UPI0004EDD926	UniPathway:UPA00904	UniProt:A0A078F905	MapMan:35.1	:	:

Description

BnaC02g20260DBnaC02g20260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F905]

Coordinates

chrLK031996:-:438827..439763

Molecular Weight (calculated)

10013.8 Da

IEP (calculated)

9.751

GRAVY (calculated)

-0.501

Length

89 amino acids

Sequence
(BLAST)

1: MKKSPTSFSA ALAWKSTLLN HLFGTNFREM DAFRGTRAYI EAAENMFEDD VASNKAIGTF GSSLMRQQAK NPDKLSVLTH CNTGRYDFR

Best Arabidopsis Sequence Match ( AT2G05830.4 )
(BLAST)

001: MEMVVRGAPA IAIAAALSLA VEVFNFHGFD GSASDAVAFL ENKLDYLVSS RPTAVNLADA ALKLKHVIAK ALATATEAKS IFKAYIEASE DMLEDDVVSN
101: KAIGNFGLSL LRQQAKNPDK LSVLTHCNTG SLATAGYGTA LGVIRALHTQ GILERAYCTE TRPFNQGSRL TAFELVHEKI PATLIADSAA AALMKDGRVD
201: GVIVGADRVA SNGDTANKIG TYSLALCAKH HGIPFYVAAP LTSVDLSLSS GKEIVIEERS PKELMHTHGG LGERIAAPGI SVWNPAFDMT PAELIAGIIT
301: EKGVITKNGN DTFDISSFAK KITGNSSR

Arabidopsis Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [extracellular,cytosol,golgi,plasma membrane,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.