Factsheet for PGSC0003DMT400067117

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400021687
PGSC0003DMT400025910
PGSC0003DMT400042160
PGSC0003DMT400046928
PGSC0003DMT400078176

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11300.1	PGSC0003DMT400021687	AT1G71380.1	20706207
AT5G11300.1	PGSC0003DMT400025910	AT1G76540.1	12857813
AT5G11300.1	PGSC0003DMT400042160	AT3G11270.1	20706207
AT5G11300.1	PGSC0003DMT400046928	AT3G56150.1	20706207
AT5G11300.1	PGSC0003DMT400078176	AT3G56150.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065680.2.1	Tomato	nucleus, plastid	89.94	94.11
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	46.28	57.36
CDX87087	Canola	plastid	44.06	52.52
KRH52524	Soybean	nucleus	48.29	51.17
KRH61850	Soybean	nucleus	49.5	50.41
AT5G11300.1	Thale cress	plastid	44.06	50.23
CDX97090	Canola	nucleus	43.26	49.31
KRH16044	Soybean	nucleus	44.87	48.37
AT5G25380.4	Thale cress	plastid	43.06	48.31
KRH05060	Soybean	nucleus	44.27	47.93
Bra008973.1-P	Field mustard	nucleus, plastid	42.05	47.83
CDX69768	Canola	nucleus, plastid	42.05	47.83
PGSC0003DMT400006576	Potato	nucleus	44.06	47.3
PGSC0003DMT400055428	Potato	nucleus	33.2	44.84
PGSC0003DMT400030222	Potato	nucleus	31.39	44.07
PGSC0003DMT400030176	Potato	nucleus	30.99	43.26
PGSC0003DMT400075380	Potato	nucleus	19.52	40.93
PGSC0003DMT400056625	Potato	nucleus	29.78	38.95
PGSC0003DMT400015424	Potato	plastid	35.61	37.5
PGSC0003DMT400093973	Potato	nucleus	19.72	29.7
PGSC0003DMT400025854	Potato	nucleus	24.95	28.12
PGSC0003DMT400048062	Potato	nucleus	24.35	28.07
PGSC0003DMT400018480	Potato	nucleus	23.94	28.0
PGSC0003DMT400058457	Potato	nucleus	23.14	27.51
PGSC0003DMT400003868	Potato	nucleus	23.94	27.48
PGSC0003DMT400015245	Potato	nucleus	23.54	26.65
PGSC0003DMT400072211	Potato	nucleus	23.94	25.65
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	44.87	22.55
Bra036544.1-P	Field mustard	nucleus	44.47	22.39

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	ncoils:Coil	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:M1CGQ5
PFAM:PF00134	PFAM:PF02984	EnsemblPlantsGene:PGSC0003DMG400026091	PGSC:PGSC0003DMG400026091	EnsemblPlants:PGSC0003DMT400067117	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF212	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI000294D175	:	:	:	:	:

Description

Cyclin A2 [Source:PGSC_GENE;Acc:PGSC0003DMG400026091]

Coordinates

chr6:-:46082121..46090818

Molecular Weight (calculated)

56365.7 Da

IEP (calculated)

8.564

GRAVY (calculated)

-0.404

Length

497 amino acids

Sequence
(BLAST)

001: MATGSSNLKV PTMRITRARA KTLGSSGGLP PLHPSVRQDK KQGLVTQGTK SKRPAPDENK PANSSSTASQ QPKRRAVLRD VTNVLCENPY MNCINGSKFQ
101: VKKFSDKRNS KVTPAILVKK PELEDRKESM IEEARKVKVE ESQEHCSQAH FKDHPLTQPS EYITAAQSGL ADLMPVNRSS CYGITLQNTT PKDESKVCLK
201: QEGSNSLGIA DIDSKHKDPL MCSLYAPDIY NNLHAMELDR RPAFNYMEKL QRDINKGMRS ILIDWLVEVS EEYRLVPDTL YLTVHLIDRF LSEHYIEKQK
301: LQLLGVTCML IASKYEEICA PRVEEFCFIT DNTYSKEEVV RMESLVLNFL GFQLTAPTTK KFLRRFVQAS QASYEVPSVE LEFMANYLAE LTLAEYSFLK
401: FLPSVTAASA VFLARWTLDQ SNHPWNPTLE HYTTYKALDL KTTVLLLQDL QMNTSGSTLN AIREKYKQPK VRNFITTVLF CVHPHGSAVY HCTEAFI

Best Arabidopsis Sequence Match ( AT1G80370.1 )
(BLAST)

001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S

Arabidopsis Description

CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.