Factsheet for Solyc06g065680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008370.2.1
Solyc01g102560.2.1
Solyc01g102570.2.1
Solyc01g102590.2.1
Solyc01g102600.2.1
Solyc04g082840.2.1
Solyc06g076150.2.1
Solyc11g040340.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11300.1	Solyc11g040340.1.1	AT1G71380.1	20706207
AT5G11300.1	Solyc04g082840.2.1	AT1G76540.1	12857813
AT5G11300.1	Solyc01g008370.2.1	AT3G11270.1	20706207
AT5G11300.1	Solyc01g102560.2.1	AT3G56150.1	20706207
AT5G11300.1	Solyc01g102570.2.1	AT3G56150.1	20706207
AT5G11300.1	Solyc01g102590.2.1	AT3G56150.1	20706207
AT5G11300.1	Solyc01g102600.2.1	AT3G56150.1	20706207
AT5G11300.1	Solyc06g076150.2.1	AT3G56150.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067117	Potato	plastid	94.11	89.94
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	51.16	60.6
CDX87087	Canola	plastid	46.95	53.48
KRH52524	Soybean	nucleus	52.0	52.67
KRH61850	Soybean	nucleus	52.84	51.43
AT5G11300.1	Thale cress	plastid	46.95	51.15
CDX97090	Canola	nucleus	46.32	50.46
KRH16044	Soybean	nucleus	48.42	49.89
AT5G25380.4	Thale cress	plastid	46.53	49.89
Bra008973.1-P	Field mustard	nucleus, plastid	45.05	48.97
CDX69768	Canola	nucleus, plastid	45.05	48.97
Solyc03g120440.1.1	Tomato	nucleus, plastid	46.53	48.25
KRH05060	Soybean	nucleus	46.53	48.15
Solyc04g078310.2.1	Tomato	nucleus	36.21	46.36
Solyc12g088530.1.1	Tomato	nucleus	33.47	44.92
Solyc12g088500.1.1	Tomato	nucleus	32.84	44.07
Solyc12g088520.1.1	Tomato	nucleus	32.84	43.94
Solyc12g088470.1.1	Tomato	nucleus	32.63	43.06
Solyc10g049360.1.1	Tomato	nucleus	32.42	40.74
Solyc11g005090.1.1	Tomato	plastid	38.32	37.14
Solyc02g061650.1.1	Tomato	nucleus	22.74	30.77
Solyc10g078330.1.1	Tomato	nucleus	25.89	29.08
Solyc04g082430.2.1	Tomato	nucleus	24.0	29.01
Solyc02g082820.2.1	Tomato	nucleus	25.26	27.65
Solyc12g094600.1.1	Tomato	nucleus	24.63	27.53
Solyc03g032190.2.1	Tomato	nucleus	24.84	27.38
Solyc06g073610.2.1	Tomato	nucleus	24.84	26.82
Solyc01g009040.2.1	Tomato	nucleus	24.42	26.67
Solyc10g080950.1.1	Tomato	nucleus	25.26	25.97
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	48.21	23.15
Bra036544.1-P	Field mustard	nucleus	47.79	23.0
Solyc07g066660.2.1	Tomato	nucleus	22.11	14.21

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EMBL:AJ243452	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF212	UniProt:Q9XGI4
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc06g065680.2	EnsemblPlants:Solyc06g065680.2.1	UniParc:UPI000009DCAE

Description

Cyclin A2 [Source:UniProtKB/TrEMBL;Acc:Q9XGI4]

Coordinates

chr6:+:41102337..41107997

Molecular Weight (calculated)

53923.6 Da

IEP (calculated)

8.576

GRAVY (calculated)

-0.447

Length

475 amino acids

Sequence
(BLAST)

001: MRITRARAKT LGSSGGLPPL HPSVRQDKKQ GLVTQGTKSK RPAPDENKPA NSSSTASQQP KRRAVLRDVT NVLCENPYMN CINGSKFQVK KFSDKRNSKV
101: TPALLVKKPE LEDRKESVIE EAKMVKVEES QEHCSQAHFK DHPFTQPSEY ITAAQSGLVD LMPVNRSSCN DITLQTTTPK DESKVCLKQE GSNSLSIADI
201: DSKHKDPLMC SLYAPDIYNN LQAMELDRRP SFNYMEKLQR DINKGMRSIL IDWLVEVSEE YRLVPDTLYL TVHLIDRFLS EHYIEKQKLQ LLGVTCMLIA
301: SKYEEICAPR VEEFCFITDN TYSKEEVVRM ESLVLNFLGF QLAAPTTKKF LRRFVQASQA SYEVPSVELE FMANYLAELT LAEYSFLKFL PSVTAASAVF
401: LARWTLDQSN HPWNSTLEHY TTYKASDLKT TVLLLQDLQM NTSGSTLNAI REKYKQPKFK SVATLSSPKP VQSLF

Best Arabidopsis Sequence Match ( AT1G80370.1 )
(BLAST)

001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S

Arabidopsis Description

CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.