Factsheet for Solyc04g082840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008370.2.1
Solyc01g008950.2.1
Solyc01g107730.2.1
Solyc01g108610.2.1	nucleus
Solyc02g061650.1.1
Solyc02g090680.2.1	nucleus
Solyc03g005240.1.1
Solyc03g120440.1.1	nucleus, nucleus
Solyc04g078310.2.1	nucleus
Solyc04g081350.2.1
Solyc04g082840.2.1	cytosol, nucleus
Solyc05g006050.2.1
Solyc05g051410.2.1	cytosol, nucleus
Solyc06g053930.2.1
Solyc06g063220.2.1
Solyc06g065680.2.1	nucleus
Solyc07g044760.2.1
Solyc07g054950.1.1	nucleus
Solyc07g066660.2.1	nucleus, nucleus
Solyc08g022210.2.1
Solyc08g066330.1.1
Solyc10g077010.1.1
Solyc10g078330.1.1	cytoskeleton, cytoskeleton, cytosol, cytosol, cytosol, cytosol
Solyc10g078430.1.1	cytosol, nucleus
Solyc10g080950.1.1	cytoskeleton, cytoskeleton, cytosol, cytosol, cytosol, cytosol
Solyc10g081170.1.1
Solyc11g005090.1.1	nucleus
Solyc11g010460.1.1	cytosol, nucleus
Solyc11g072240.1.1
Solyc12g006320.1.1
Solyc12g055760.1.1
Solyc12g088470.1.1	nucleus
Solyc12g088500.1.1	nucleus
Solyc12g088520.1.1	nucleus
Solyc12g088530.1.1	nucleus
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20930.1	Solyc07g066660.2.1	AT1G16330.1	20407024
AT1G20930.1	Solyc04g081350.2.1	AT1G47870.1	20407024
AT1G20930.1	Solyc06g063220.2.1	AT1G51650.1	20706207
AT1G20930.1	Solyc12g055760.1.1	AT1G51650.1	20706207
AT1G20930.1	Solyc08g022210.2.1	AT2G05830.1	20706207
AT1G20930.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT1G20930.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT1G20930.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT1G20930.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT1G20930.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT1G20930.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT1G20930.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT1G20930.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT1G20930.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT1G20930.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT1G20930.1	Solyc01g008370.2.1	AT3G11270.1	20706207
AT1G20930.1	Solyc07g044760.2.1	AT3G22310.1	20706207
AT1G20930.1	Solyc12g006320.1.1	AT3G22310.1	20706207
AT1G20930.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT1G20930.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT1G20930.1	Solyc10g078330.1.1	AT4G37490.1	20407024
AT1G20930.1	Solyc10g080950.1.1	AT4G37490.1	20407024
AT1G20930.1	Solyc10g078330.1.1	AT5G06150.1	20407024
AT1G20930.1	Solyc10g080950.1.1	AT5G06150.1	20407024
AT1G20930.1	Solyc10g078330.1.1	AT5G06150.1	20407024
AT1G20930.1	Solyc10g080950.1.1	AT5G06150.1	20407024
AT1G20930.1	Solyc06g065680.2.1	AT5G11300.1	20407024
AT1G20930.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT1G20930.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT1G20930.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT1G20930.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT1G20930.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT1G76540.1	Solyc03g120440.1.1	AT1G15570.1	20407024
AT1G76540.1	Solyc07g066660.2.1	AT1G16330.1	20407024
AT1G76540.1	Solyc11g005090.1.1	AT1G44110.1	20407024
AT1G76540.1	Solyc05g006050.2.1	AT1G70210.1	12857813
AT1G76540.1	Solyc04g082840.2.1	AT1G76540.1	20407024
AT1G76540.1	Solyc04g082840.2.1	AT1G76540.1	20407024
AT1G76540.1	Solyc03g120440.1.1	AT1G80370.1	20407024
AT1G76540.1	Solyc02g061650.1.1	AT2G17620.1	12857813
AT1G76540.1	Solyc01g108610.2.1	AT3G19150.1	20407024
AT1G76540.1	Solyc02g090680.2.1	AT3G19150.1	20407024
AT1G76540.1	Solyc08g066330.1.1	AT3G48750.1	10420643
AT1G76540.1	Solyc07g054950.1.1	AT4G03270.1	20407024
AT1G76540.1	Solyc01g107730.2.1	AT4G34160.1	12857813
AT1G76540.1	Solyc10g078330.1.1	AT4G37490.1	20407024
AT1G76540.1	Solyc10g080950.1.1	AT4G37490.1	20407024
AT1G76540.1	Solyc10g078430.1.1	AT5G03415.1	20407024
AT1G76540.1	Solyc10g078430.1.1	AT5G03415.1	20407024
AT1G76540.1	Solyc10g078330.1.1	AT5G06150.1	20407024
AT1G76540.1	Solyc10g080950.1.1	AT5G06150.1	20407024
AT1G76540.1	Solyc10g078330.1.1	AT5G06150.1	20407024
AT1G76540.1	Solyc10g080950.1.1	AT5G06150.1	20407024
AT1G76540.1	Solyc05g051410.2.1	AT5G10440.1	20407024
AT1G76540.1	Solyc11g010460.1.1	AT5G10440.1	20407024
AT1G76540.1	Solyc05g051410.2.1	AT5G10440.1	20407024
AT1G76540.1	Solyc11g010460.1.1	AT5G10440.1	20407024
AT1G76540.1	Solyc06g065680.2.1	AT5G11300.1	12857813
AT1G76540.1	Solyc06g065680.2.1	AT5G11300.1	20407024
AT1G76540.1	Solyc04g078310.2.1	AT5G43080.1	20407024
AT1G76540.1	Solyc12g088470.1.1	AT5G43080.1	20407024
AT1G76540.1	Solyc12g088500.1.1	AT5G43080.1	20407024
AT1G76540.1	Solyc12g088520.1.1	AT5G43080.1	20407024
AT1G76540.1	Solyc12g088530.1.1	AT5G43080.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025910	Potato	cytosol	99.05	99.05
KRH06014	Soybean	cytosol	83.49	83.76
Bra015735.1-P	Field mustard	cytosol	81.59	82.11
AT1G20930.1	Thale cress	cytosol	81.9	81.9
CDX87588	Canola	cytosol	81.27	81.79
KRH37522	Soybean	cytosol	82.22	81.7
KRH48128	Soybean	cytosol	81.27	81.27
CDX88294	Canola	cytosol	80.63	81.15
VIT_18s0122g00550.t01	Wine grape	cytosol	83.17	81.11
AT1G76540.1	Thale cress	cytosol	80.32	80.83
CDY31856	Canola	cytosol	80.95	80.7
CDY01345	Canola	cytosol	80.95	80.7
Bra012258.1-P	Field mustard	cytosol	80.95	80.7
GSMUA_Achr3P03700_001	Banana	cytosol	77.14	80.46
KRH17547	Soybean	cytosol	84.44	78.93
TraesCS7D01G247700.1	Wheat	cytosol	75.56	73.01
TraesCS7B01G142600.1	Wheat	cytosol	75.56	73.01
TraesCS7A01G248700.1	Wheat	cytosol	75.56	73.01
Zm00001d046912_P001	Maize	cytosol, mitochondrion, peroxisome	75.24	72.92
GSMUA_Achr9P12350_001	Banana	cytosol	73.97	72.36
EER90152	Sorghum	cytosol, mitochondrion, peroxisome	74.6	72.31
Os08t0512600-01	Rice	cytosol, plasma membrane	73.65	71.17
Zm00001d031485_P001	Maize	mitochondrion	73.97	70.82
GSMUA_Achr11P...	Banana	cytosol	74.29	70.06
Solyc10g074720.1.1	Tomato	cytosol, nucleus	64.13	66.67
HORVU7Hr1G051180.3	Barley	cytosol	69.84	65.87
Solyc11g070140.1.1	Tomato	cytosol	52.06	55.78
OQU80908	Sorghum	mitochondrion	74.6	55.69
Solyc12g095860.1.1	Tomato	cytosol, nucleus	51.43	55.1
Solyc08g066330.1.1	Tomato	cytosol	49.52	50.81
Solyc12g027870.1.1	Tomato	cytosol	39.68	37.2
Solyc08g067450.1.1	Tomato	cytosol	32.7	32.91
Solyc08g081280.2.1	Tomato	cytosol, nucleus	38.73	29.12
Solyc08g005470.2.1	Tomato	cytosol	33.65	23.5
Solyc08g075890.2.1	Tomato	cytosol	33.33	23.18
Solyc06g083210.2.1	Tomato	cytosol	31.43	22.65
Solyc05g014760.2.1	Tomato	nucleus	44.13	17.18

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.2	MapMan:18.4.3.1.2	Gene3D:3.30.200.20	EMBL:AJ297917	GO:GO:0000082
GO:GO:0000166	GO:GO:0000307	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0004693	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007049
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008284
GO:GO:0009987	GO:GO:0010033	GO:GO:0010389	GO:GO:0010468	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0019538	GO:GO:0030332	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF178	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	UniProt:Q9FSH4	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc04g082840.2
EnsemblPlants:Solyc04g082840.2.1	UniParc:UPI00000A2D0E	:	:	:	:

Description

B2-type cyclin dependent kinase [Source:UniProtKB/TrEMBL;Acc:Q9FSH4]

Coordinates

chr4:-:66369481..66371442

Molecular Weight (calculated)

36027.0 Da

IEP (calculated)

9.148

GRAVY (calculated)

-0.320

Length

315 amino acids

Sequence
(BLAST)

001: MEAAKNAGKS VSAMEAFEKL EKVGEGTYGK VYRARDRITG KIVALKKTRL HEDEEGVPPT TLREISLLRM LSRDPHIVRL MDVKQGQNKE GKTVLYLVFE
101: YMDTDVKKFI RTFRAKGETM PLKIVKSLMY QLCKGVAFCH GHGVLHRDLK PHNLLMDRKT NVLKLADFGL GRAYTLPIKK YTHEILTLWY RAPEVLLGAT
201: HYSTAVDMWS VGCIFAELVT NQALFPGDSE LQQLLHIFRL LGTPNEELWP GVSKLVNWHE YPQWKPQPLS TVVPGLDEDG IHLLSEMLHY EPSRRISAKK
301: AMEHPYFDDL DKTPL

Best Arabidopsis Sequence Match ( AT1G20930.1 )
(BLAST)

001: MDNNGVKPAV SAMEAFEKLE KVGEGTYGKV YRAREKATGM IVALKKTRLH EDEEGVPPTT LREISILRML ARDPHIVRLM DVKQGINKEG KTVLYLVFEY
101: VDTDLKKFIR SFRQAGQNIP QNTVKCLMYQ LCKGMAFCHG HGVLHRDLKP HNLLMDRKTM TLKIADLGLA RAFTLPMKKY THEILTLWYR APEVLLGATH
201: YSTGVDMWSV GCIFAELVTK QAIFAGDSEL QQLLRIFRLL GTPNEEVWPG VSKLKDWHEY PQWKPLSLST AVPNLDEAGL DLLSKMLEYE PAKRISAKKA
301: MEHPYFDDLP DKSSL

Arabidopsis Description

CDKB2-2Cyclin-dependent kinase B2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG64]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.