Factsheet for Solyc12g095860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075349	Potato	cytosol	98.98	98.98
VIT_15s0045g00310.t01	Wine grape	cytosol	94.22	94.22
KRH11866	Soybean	cytosol, nucleus	92.86	92.86
KRH36887	Soybean	cytosol, nucleus	92.86	92.86
KRH42252	Soybean	cytosol	90.14	90.14
KRH58370	Soybean	cytosol	91.16	89.33
GSMUA_Achr11P...	Banana	cytosol	82.99	86.83
TraesCS5A01G521700.1	Wheat	cytosol	86.05	86.05
TraesCS4B01G353600.1	Wheat	cytosol	86.05	86.05
Solyc11g070140.1.1	Tomato	cytosol	86.05	86.05
TraesCS6B01G105100.1	Wheat	cytosol	85.71	86.01
TraesCS6A01G078200.1	Wheat	cytosol	85.37	85.67
Solyc08g066330.1.1	Tomato	cytosol	88.1	84.36
Zm00001d053930_P001	Maize	cytosol	83.67	84.25
EES04403	Sorghum	cytosol	82.99	83.28
KXG40336	Sorghum	cytosol	82.65	82.65
Zm00001d048497_P002	Maize	cytosol	85.03	82.51
TraesCS4D01G347600.1	Wheat	cytosol	86.05	77.37
HORVU4Hr1G085830.4	Barley	cytosol	85.03	73.31
Zm00001d027373_P003	Maize	cytosol	85.03	68.12
HORVU6Hr1G013680.2	Barley	cytosol, plastid	85.71	68.11
Os02t0123100-01	Rice	mitochondrion	84.69	66.22
Solyc10g074720.1.1	Tomato	cytosol, nucleus	57.48	55.78
Solyc04g082840.2.1	Tomato	cytosol	55.1	51.43
Solyc12g027870.1.1	Tomato	cytosol	44.56	38.99
Solyc08g067450.1.1	Tomato	cytosol	35.71	33.55
Solyc08g081280.2.1	Tomato	cytosol, nucleus	44.9	31.5
Solyc08g075890.2.1	Tomato	cytosol	38.78	25.17
Solyc06g083210.2.1	Tomato	cytosol	36.39	24.49
Solyc08g005470.2.1	Tomato	cytosol	37.07	24.17
Solyc05g014760.2.1	Tomato	nucleus	47.28	17.18

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.1	MapMan:18.4.3.1.1	Gene3D:3.30.200.20	GO:GO:0000003	GO:GO:0000166
GO:GO:0000226	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004693
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005856	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464
GO:GO:0006468	GO:GO:0006950	GO:GO:0007049	GO:GO:0007346	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010468	GO:GO:0016043	GO:GO:0016301	GO:GO:0016310	GO:GO:0016572
GO:GO:0016740	GO:GO:0019538	GO:GO:0030154	GO:GO:0044772	GO:GO:0051445	GO:GO:0072686
InterPro:IPR000719	UniProt:K4DH59	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF323	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc12g095860.1	EnsemblPlants:Solyc12g095860.1.1	UniParc:UPI0002769A08

Description

No Description!

Coordinates

chr12:-:64975091..64978531

Molecular Weight (calculated)

33748.9 Da

IEP (calculated)

7.683

GRAVY (calculated)

-0.237

Length

294 amino acids

Sequence
(BLAST)

001: MDQYEKVEKI GEGTYGVVYK ARDRVTNETI ALKKIRLEQE DEGVPSTAIR EISLLKEMQH GNIVRLQDVV HSEKRLYLVF EYLDLDLKKH MDSCPEFSKD
101: PRLVKMFLYQ ILRGIAYCHS HRVLHRDLKP QNLLIDRRTN VLKLADFGLA RAFGIPVRTF THEVVTLWYR APEILLGSRH YSTPVDVWSV GCIFAEMVNQ
201: RPLFPGDSEI DELFKIFRVV GTPNEDTWPG VTSLPDFKSA FPKWPSKDLG TVVPNLGAAG LDLIGKMLYL DPSKRITARS ALEHEYFKDI GFVP

Best Arabidopsis Sequence Match ( AT3G48750.1 )
(BLAST)

001: MDQYEKVEKI GEGTYGVVYK ARDKVTNETI ALKKIRLEQE DEGVPSTAIR EISLLKEMQH SNIVKLQDVV HSEKRLYLVF EYLDLDLKKH MDSTPDFSKD
101: LHMIKTYLYQ ILRGIAYCHS HRVLHRDLKP QNLLIDRRTN SLKLADFGLA RAFGIPVRTF THEVVTLWYR APEILLGSHH YSTPVDIWSV GCIFAEMISQ
201: KPLFPGDSEI DQLFKIFRIM GTPYEDTWRG VTSLPDYKSA FPKWKPTDLE TFVPNLDPDG VDLLSKMLLM DPTKRINARA ALEHEYFKDL GGMP

Arabidopsis Description

CDKA-1Cyclin-dependent kinase A-1 [Source:UniProtKB/Swiss-Prot;Acc:P24100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.