Factsheet for Solyc05g014760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009620.2.1
Solyc01g009630.2.1
Solyc01g096180.2.1
Solyc01g097050.2.1
Solyc01g098350.2.1
Solyc03g025880.2.1
Solyc03g098470.2.1
Solyc03g117940.2.1
Solyc05g051410.2.1	nucleus
Solyc06g072280.2.1
Solyc09g075130.2.1
Solyc09g090660.2.1
Solyc09g091780.2.1	nucleus
Solyc10g005280.1.1
Solyc10g009330.2.1
Solyc11g010460.1.1	nucleus
Solyc12g098310.1.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67580.1	Solyc03g117940.2.1	AT1G09760.1	20706207
AT1G67580.1	Solyc10g005280.1.1	AT1G61870.1	20706207
AT1G67580.1	Solyc03g098470.2.1	AT2G18740.1	20706207
AT1G67580.1	Solyc06g072280.2.1	AT2G18740.1	20706207
AT1G67580.1	Solyc01g098350.2.1	AT2G26430.1	20706207
AT1G67580.1	Solyc09g091780.2.1	AT2G32710.1	20407024
AT1G67580.1	Solyc12g098310.1.1	AT2G32710.1	20407024
AT1G67580.1	Solyc09g090660.2.1	AT2G33340.1	20706207
AT1G67580.1	Solyc01g096180.2.1	AT2G46610.1	20706207
AT1G67580.1	Solyc10g009330.2.1	AT2G46610.1	20706207
AT1G67580.1	Solyc09g075130.2.1	AT2G47640.1	20706207
AT1G67580.1	Solyc01g097050.2.1	AT3G04620.1	20706207
AT1G67580.1	Solyc09g075130.2.1	AT3G62840.1	20706207
AT1G67580.1	Solyc01g009620.2.1	AT4G25550.1	20706207
AT1G67580.1	Solyc01g009630.2.1	AT4G25550.1	20706207
AT1G67580.1	Solyc03g025880.2.1	AT4G25550.1	20706207
AT1G67580.1	Solyc05g051410.2.1	AT5G10440.1	20407024
AT1G67580.1	Solyc11g010460.1.1	AT5G10440.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044987	Potato	nucleus	95.18	96.61
PGSC0003DMT400034649	Potato	nucleus	89.0	87.7
GSMUA_Achr8P01120_001	Banana	nucleus	48.83	68.34
VIT_01s0010g02550.t01	Wine grape	nucleus	63.29	67.9
KRH42643	Soybean	nucleus	60.82	66.04
KRH58745	Soybean	nucleus	60.69	65.82
GSMUA_Achr5P25400_001	Banana	nucleus	54.88	63.61
GSMUA_Achr8P08900_001	Banana	nucleus	50.19	62.56
KRH31446	Soybean	nucleus	57.11	62.26
CDY01821	Canola	nucleus	53.28	61.84
Bra004236.1-P	Field mustard	nucleus	53.89	61.5
CDX96081	Canola	nucleus	53.89	61.5
AT1G67580.1	Thale cress	nucleus	56.0	60.24
GSMUA_Achr11P...	Banana	nucleus	51.92	60.17
KRG97452	Soybean	nucleus	46.23	59.74
EES12419	Sorghum	nucleus	50.31	58.81
Os04t0488000-01	Rice	nucleus	51.17	58.31
Zm00001d003222_P016	Maize	nucleus	50.31	58.31
TraesCS2D01G345200.4	Wheat	nucleus	51.55	57.44
TraesCS2A01G346500.1	Wheat	nucleus	51.42	57.3
TraesCS2B01G364800.5	Wheat	nucleus	51.55	56.73
EES05381	Sorghum	nucleus	47.1	56.44
Zm00001d025739_P006	Maize	nucleus	50.19	56.39
Zm00001d017128_P002	Maize	nucleus	45.86	55.87
TraesCS6B01G244100.1	Wheat	nucleus	46.11	55.75
TraesCS6A01G214100.1	Wheat	nucleus	46.48	55.7
Os02t0602100-02	Rice	nucleus	47.34	55.27
TraesCS6D01G196700.1	Wheat	nucleus	45.98	55.11
HORVU2Hr1G084400.1	Barley	nucleus	50.8	54.58
HORVU6Hr1G054600.5	Barley	nucleus	45.61	54.34
Solyc12g095860.1.1	Tomato	cytosol, nucleus	17.18	47.28
Solyc11g070140.1.1	Tomato	cytosol	17.06	46.94
Solyc10g074720.1.1	Tomato	cytosol, nucleus	16.56	44.22
Solyc04g082840.2.1	Tomato	cytosol	17.18	44.13
Solyc08g066330.1.1	Tomato	cytosol	16.19	42.67
Solyc12g027870.1.1	Tomato	cytosol	16.32	39.29
Solyc08g067450.1.1	Tomato	cytosol	13.72	35.46
Solyc08g081280.2.1	Tomato	cytosol, nucleus	16.56	31.98
Solyc08g005470.2.1	Tomato	cytosol	15.57	27.94
Solyc08g075890.2.1	Tomato	cytosol	15.33	27.37
Solyc06g083210.2.1	Tomato	cytosol	14.59	27.0

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.7	MapMan:18.4.3.1.7	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004693	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006468	GO:GO:0007049
GO:GO:0007346	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010468	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	UniProt:K4BYJ5	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF332	InterPro:Prot_kinase_dom	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc05g014760.2	EnsemblPlants:Solyc05g014760.2.1	UniParc:UPI00027666BF	SEG:seg

Description

No Description!

Coordinates

chr5:+:8917405..8920972

Molecular Weight (calculated)

90691.9 Da

IEP (calculated)

6.994

GRAVY (calculated)

-0.797

Length

809 amino acids

Sequence
(BLAST)

001: MAAGRHGGYR DNEFRGREAE FEVSRRELGY SKGDYERIRS EDRDFDRDRG HDRGGRDRGR LRQKDVKERD MINGSFRSMS SRSDSGSSDG DGGGVRRSGG
101: LSVRAVDREP IKERDMMNGS YRSGSSRSDS GSSDGDAGGM RRSGLRVGAI DREPGELSSE SGSDGAIESD QKTKYAANGN QSSVQSKKRK YSPIIWDRED
201: KEVNRMSKSR NSPVAAKLPP PPPLPKSSGQ LANFPSERVE QVSLLNTNNV HIIEPSPSNT NTALGLLMDA SHESPVDICS PPVDEKQLPS QEARKVEDEE
301: YVPVPTIRSS RWATDADSPA DEGEISGDDM LLLKKRRAVP HLAEIGGRRK SLTPEYEELK RESSGGNRTR SSDSDEHIRS CSRESYQGNE LDKNGPMDVD
401: KDRNYDGASV SQSDTESEDE HDSRGTPEAA LPPQRSVNML QGCRSVDEFE RLNRIDEGTY GVVYRAKDKK TGEIVALKKV KMEKEREGFP LTSLREINIL
501: LSLHHPSIVD VKEVVVGSSL DSIFMVMEYM EHDLKALMET MKKPFTQSEV KCLMLQLLHG VKYLHDNWVL HRDLKTSNLL LNNQGELKIC DFGLARQYGS
601: PLKPYTHLVV TLWYRAPELL LGAKQYSTAI DMWSLGCIMA EMLCKEPLFN GKTEVDQIDK IFRILGTPNE MIWPGFSKLP GVKVNFVKHQ LPALGDSGLA
701: FWFNNLRNKF QSPTTSYMGK PDLSESGLDL LNKLLTYDPA KRISADAALN HEWFREVPLP KSKEFMPTFP AQHAQDRRVR RVMKSPDPLE EQRRKELKQG
801: VLGTGGLFG

Best Arabidopsis Sequence Match ( AT1G67580.2 )
(BLAST)

001: MAAGRNIRYP DHELRDQESN SRFSRRDSAY ANEDYNHVRN GAIDNGKGRV SNLRHGDRDR IKSGARQEEN KMVSSGFRLS KSNPGSREVF IDLGPKRCGF
101: SARSVDREPG ELSSESGSDD LIESESLAKV NGVVKEVENR AQSPVEKKRK FSPIVWDRDD HERSNLSRNE KPVEVTPLPP PPPLVKRSSQ SPSVSCGGNS
201: HYSPAKSDMH QDPVEVGVSA VSMPALSPSV EMSSLCVVEQ SSNAEQDDKQ EHATHLEEDE NMPTRHISSS RWAAGNSSPT DEVEIVEEVG EKKRRKKPFP
301: VQGRFRNTSQ TPEVGELVRE GYRSSDSDER GHHSLPGSRD DFEERDAVKS DKMEIDEEEH RRENSVDSLS ETDSDDEYVR HETPEPASTP LRSINMLQGC
401: RSVDEFERLN KIDEGTYGVV YRAKDKKTGE IVALKKVKME KEREGFPLTS LREINILLSF HHPSIVDVKE VVVGSSLDSI FMVMEYMEHD LKALMETMKQ
501: RFSQSEVKCL MLQLLEGVKY LHDNWVLHRD LKTSNLLLNN RGELKICDFG LARQYGSPLK PYTHLVVTLW YRAPELLLGA KQYSTAIDMW SLGCIMAELL
601: MKAPLFNGKT EFDQLDKIFR ILGTPNESIW PGFSKLPGVK VNFVKHQYNL LRKKFPATSF TGAPVLSDAG FDLLNKLLTY DPERRITVNE ALKHDWFREV
701: PLPKSKDFMP TFPAQHAQDR RGRRMVKSPD PLEEQRRKEL TQTELGSGGL FG

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAG1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.