CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90206
KRG90340
KRG91493
KRG92238	nucleus
KRG92316
KRG92697
KRG92800
KRG96999
KRG99320
KRG99448	nucleus
KRH02922
KRH06424
KRH11411
KRH18975
KRH20872
KRH20873
KRH26192
KRH33434
KRH33584
KRH33999
KRH34103
KRH34474
KRH35335
KRH45568	nucleus
KRH45698
KRH47859
KRH53956
KRH60444
KRH63981
KRH68751
KRH69654	nucleus
KRH74510	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67580.1	KRG90206	AT1G09760.1	20706207
AT1G67580.1	KRH33434	AT1G09760.1	20706207
AT1G67580.1	KRG99320	AT1G23860.1	20706207
AT1G67580.1	KRH45698	AT1G23860.1	20706207
AT1G67580.1	KRH11411	AT1G61870.1	20706207
AT1G67580.1	KRH20872	AT1G61870.1	20706207
AT1G67580.1	KRH20873	AT1G61870.1	20706207
AT1G67580.1	KRH02922	AT2G18740.1	20706207
AT1G67580.1	KRH18975	AT2G18740.1	20706207
AT1G67580.1	KRH53956	AT2G18740.1	20706207
AT1G67580.1	KRH63981	AT2G18740.1	20706207
AT1G67580.1	KRG92800	AT2G26430.1	20706207
AT1G67580.1	KRH33999	AT2G26430.1	20706207
AT1G67580.1	KRG92238	AT2G32710.1	20407024
AT1G67580.1	KRG90340	AT2G33340.1	20706207
AT1G67580.1	KRH33584	AT2G33340.1	20706207
AT1G67580.1	KRH06424	AT2G46610.1	20706207
AT1G67580.1	KRH47859	AT2G46610.1	20706207
AT1G67580.1	KRG92316	AT2G47640.1	20706207
AT1G67580.1	KRH26192	AT2G47640.1	20706207
AT1G67580.1	KRH34474	AT2G47640.1	20706207
AT1G67580.1	KRH60444	AT2G47640.1	20706207
AT1G67580.1	KRG92697	AT3G04620.1	20706207
AT1G67580.1	KRG96999	AT3G04620.1	20706207
AT1G67580.1	KRH34103	AT3G04620.1	20706207
AT1G67580.1	KRH68751	AT3G04620.1	20706207
AT1G67580.1	KRG92316	AT3G62840.1	20706207
AT1G67580.1	KRH26192	AT3G62840.1	20706207
AT1G67580.1	KRH34474	AT3G62840.1	20706207
AT1G67580.1	KRH60444	AT3G62840.1	20706207
AT1G67580.1	KRG91493	AT4G25550.1	20706207
AT1G67580.1	KRH35335	AT4G25550.1	20706207
AT1G67580.1	KRG99448	AT5G10440.1	20407024
AT1G67580.1	KRH45568	AT5G10440.1	20407024
AT1G67580.1	KRH69654	AT5G10440.1	20407024
AT1G67580.1	KRH74510	AT5G10440.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58745	Soybean	nucleus	93.69	93.57
KRH31446	Soybean	nucleus	77.45	77.76
KRG97452	Soybean	nucleus	62.55	74.44
VIT_01s0010g02550.t01	Wine grape	nucleus	74.77	73.87
GSMUA_Achr8P01120_001	Banana	nucleus	53.83	69.38
CDY01821	Canola	nucleus	61.88	66.14
KRH57208	Soybean	cytosol	18.79	66.04
Bra004236.1-P	Field mustard	nucleus	62.42	65.59
CDX96081	Canola	nucleus	62.42	65.59
GSMUA_Achr5P25400_001	Banana	nucleus	60.94	65.04
AT1G67580.1	Thale cress	nucleus	65.5	64.89
GSMUA_Achr8P08900_001	Banana	nucleus	55.44	63.64
PGSC0003DMT400044987	Potato	nucleus	66.44	62.11
GSMUA_Achr11P...	Banana	nucleus	57.99	61.89
EES12419	Sorghum	nucleus	56.91	61.27
Os04t0488000-01	Rice	nucleus	58.26	61.13
Zm00001d003222_P016	Maize	nucleus	57.05	60.89
Solyc05g014760.2.1	Tomato	nucleus	66.04	60.82
PGSC0003DMT400034649	Potato	nucleus	66.17	60.05
Zm00001d025739_P006	Maize	nucleus	56.11	58.06
TraesCS2A01G346500.1	Wheat	nucleus	56.51	57.99
EES05381	Sorghum	nucleus	52.48	57.93
TraesCS2D01G345200.4	Wheat	nucleus	56.38	57.85
Zm00001d017128_P002	Maize	nucleus	51.54	57.83
Os02t0602100-02	Rice	nucleus	53.56	57.58
TraesCS2B01G364800.5	Wheat	nucleus	56.51	57.28
TraesCS6A01G214100.1	Wheat	nucleus	51.68	57.04
TraesCS6B01G244100.1	Wheat	nucleus	51.14	56.95
TraesCS6D01G196700.1	Wheat	nucleus	50.87	56.15
HORVU2Hr1G084400.1	Barley	nucleus	56.38	55.78
KRH03917	Soybean	nucleus	42.42	55.24
HORVU6Hr1G054600.5	Barley	nucleus	50.2	55.08
KRH57202	Soybean	nucleus	42.01	54.34
KRH11866	Soybean	cytosol, nucleus	19.06	48.3
KRH36887	Soybean	cytosol, nucleus	18.93	47.96
KRH42252	Soybean	cytosol	18.93	47.96
KRH58370	Soybean	cytosol	18.93	47.0
KRH06014	Soybean	cytosol	18.79	44.59
KRH37522	Soybean	cytosol	18.79	44.16
KRH48128	Soybean	cytosol	18.25	43.17
KRH47306	Soybean	cytosol, nucleus, plasma membrane	17.72	42.04
KRH17547	Soybean	cytosol	18.79	41.54
KRH59626	Soybean	cytosol	16.64	40.0
KRH41782	Soybean	cytosol, nucleus	17.99	36.91
KRH13011	Soybean	cytosol	16.24	36.78
KRH44859	Soybean	cytosol	15.84	35.33
KRH26046	Soybean	cytosol	13.29	33.56
KRH57887	Soybean	cytosol	10.6	33.47
KRH63972	Soybean	cytosol	20.67	33.33
KRH48600	Soybean	cytosol	17.45	32.42
KRH39114	Soybean	nucleus	17.85	32.36
KRH60482	Soybean	cytosol	17.72	32.27
KRH40974	Soybean	cytosol, nucleus	19.87	32.1
KRH66138	Soybean	cytosol	17.05	29.2
KRH07433	Soybean	cytosol	16.64	28.51
KRH39665	Soybean	cytosol	17.18	28.13
KRH76377	Soybean	cytosol	16.91	28.0
KRH07697	Soybean	nucleus	16.38	27.05
KRH07201	Soybean	cytosol	14.5	25.96

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100812800	MapMan:13.1.1.2.7	MapMan:18.4.3.1.7	Gene3D:3.30.200.20	EMBL:ACUP02004822
EnsemblPlantsGene:GLYMA_08G102600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004693
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006468	GO:GO:0007049	GO:GO:0007346	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010468	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	UniProt:I1KRZ8
InterPro:IPR000719	EnsemblPlants:KRH42643	ProteinID:KRH42643	ProteinID:KRH42643.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF332	InterPro:Prot_kinase_dom	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002338C7C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:7872583..7879697

Molecular Weight (calculated)

83695.4 Da

IEP (calculated)

5.787

GRAVY (calculated)

-0.779

Length

745 amino acids

Sequence
(BLAST)

001: MAASRHGGYR ENEFKERESK LEVSRRGFAN SKEDYDRVRN GGGGEVVRGG SRDRVRVRQK DIKEREGVNG GGYRSSSSRS DSGSSGLGPR RCGFSVKAVD
101: REPGELSSES GSDDAIESEP GLKGSEVAML EETRTLSPPV PERKRKFSPI VWDQDDKEVN ELSKVRVSAS AVKVAALPPP PPLPKVFRQS QSPNAPNSGV
201: EIVPVKNRET EELQLNAASN VTLSSPSGLH SLPPKGKWDN DQEAEHPEGE DYVPTRNISS SRWAAGDNSP VDEGEILNDE EMPKSRWRVS PDLLDGRLRN
301: KLLSPEESKV EGIERARARS SESEERGARG RTSSGDDYPG SEKDDYMEVD VQGGKSETSI SHSDTDSEDE DDGRETPEPT AQPQRTFNML QGCRSVDEFE
401: RLNKIDEGTY GVVYRARDKK TGEIVALKKV KMEKEKEGFP LTSLREINIL LSFHHPYIVD VKEVVVGSSL DSIFMVMEYM EHDLKGLMEA MKQPFSQSEV
501: KCLMIQLLEG VKYLHDNWVL HRDLKTSNLL LNNRGELKIC DFGLARQYGS PLKPYTHLVV TLWYRAPELL LGAKQYSTAI DMWSLGCIMA ELLSKEPLFN
601: GRTEFDQLDK IFRILGTPNE TIWPGFSKLP GVKVNFVKHQ YNLLRKKFPA TSFTGSPVLS DSGFDLLNKL LTYDPEKRIT AEDALNHEWF REVPLPKSKE
701: FMPTFPAQHA QDRRVRRIYK SPDPLEEQRR KELQQGETGT GGIFG

Best Arabidopsis Sequence Match ( AT1G67580.2 )
(BLAST)

001: MAAGRNIRYP DHELRDQESN SRFSRRDSAY ANEDYNHVRN GAIDNGKGRV SNLRHGDRDR IKSGARQEEN KMVSSGFRLS KSNPGSREVF IDLGPKRCGF
101: SARSVDREPG ELSSESGSDD LIESESLAKV NGVVKEVENR AQSPVEKKRK FSPIVWDRDD HERSNLSRNE KPVEVTPLPP PPPLVKRSSQ SPSVSCGGNS
201: HYSPAKSDMH QDPVEVGVSA VSMPALSPSV EMSSLCVVEQ SSNAEQDDKQ EHATHLEEDE NMPTRHISSS RWAAGNSSPT DEVEIVEEVG EKKRRKKPFP
301: VQGRFRNTSQ TPEVGELVRE GYRSSDSDER GHHSLPGSRD DFEERDAVKS DKMEIDEEEH RRENSVDSLS ETDSDDEYVR HETPEPASTP LRSINMLQGC
401: RSVDEFERLN KIDEGTYGVV YRAKDKKTGE IVALKKVKME KEREGFPLTS LREINILLSF HHPSIVDVKE VVVGSSLDSI FMVMEYMEHD LKALMETMKQ
501: RFSQSEVKCL MLQLLEGVKY LHDNWVLHRD LKTSNLLLNN RGELKICDFG LARQYGSPLK PYTHLVVTLW YRAPELLLGA KQYSTAIDMW SLGCIMAELL
601: MKAPLFNGKT EFDQLDKIFR ILGTPNESIW PGFSKLPGVK VNFVKHQYNL LRKKFPATSF TGAPVLSDAG FDLLNKLLTY DPERRITVNE ALKHDWFREV
701: PLPKSKDFMP TFPAQHAQDR RGRRMVKSPD PLEEQRRKEL TQTELGSGGL FG

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAG1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.