CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH17128
KRH72767

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	KRH17128	AT2G30260.1	21798944
AT1G09760.1	KRH72767	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90206	Soybean	nucleus	83.97	83.97
AT1G09760.1	Thale cress	cytosol	66.9	77.11
VIT_01s0150g00590.t01	Wine grape	cytosol	73.87	73.87
CDY20674	Canola	cytosol	65.16	73.05
CDY31066	Canola	cytosol	64.81	72.66
Bra030797.1-P	Field mustard	cytosol	64.81	72.66
CDX94952	Canola	cytosol	65.16	72.2
CDX93483	Canola	cytosol	65.85	71.86
Bra019994.1-P	Field mustard	cytosol	64.81	71.26
GSMUA_Achr7P02600_001	Banana	cytosol	67.94	68.66
PGSC0003DMT400036729	Potato	cytosol	68.29	68.53
Solyc03g117940.2.1	Tomato	nucleus	68.29	68.53
CDY22621	Canola	cytosol	66.2	65.74
Os02t0234800-01	Rice	nucleus	63.41	64.08
EER93090	Sorghum	cytosol	62.02	62.9
Bra031683.1-P	Field mustard	cytosol	66.55	62.42
CDY06372	Canola	cytosol	66.2	61.49
TraesCS4A01G329300.1	Wheat	nucleus	60.28	60.7
HORVU5Hr1G122640.6	Barley	cytosol	59.93	60.56
TraesCS5B01G543700.1	Wheat	cytosol	59.93	60.35
TraesCS5D01G544000.1	Wheat	cytosol	59.93	60.35
TraesCS5B01G544100.2	Wheat	cytosol, nucleus, peroxisome	52.61	41.03
TraesCS5B01G003200.2	Wheat	cytosol	42.16	29.44
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	62.37	24.9

Protein Annotations

MapMan:16.4.1.2.1	Gene3D:3.80.10.10	UniProt:A0A0R0HSC1	EMBL:ACUP02006495	EnsemblPlantsGene:GLYMA_10G123200	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	EnsemblPlants:KRH33434	ProteinID:KRH33434
ProteinID:KRH33434.1	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF14580	PFscan:PS51450	PANTHER:PTHR10552
PANTHER:PTHR10552:SF6	SMART:SM00446	SUPFAM:SSF52058	InterPro:U2A'_phosphoprotein32A_C	UniParc:UPI0006EDCC6A	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:32108549..32113935

Molecular Weight (calculated)

32704.2 Da

IEP (calculated)

5.279

GRAVY (calculated)

-0.486

Length

287 amino acids

Sequence
(BLAST)

001: MVRLTADLIW KSPHFFNAIK ERELDLRGNK IAVIENLGAT EDQFDTIDLS DNEIVKLENV PYLNRLGTML INNNRITRIN PNIGEFLPNL HTLVLTNNRI
101: VNLVEIDPLA SLPKLHFLSL LDNNITKKPN YRLYVINKLK SLRVLDFKKV KNKERLEAKN LFSSKEVIEE IQRTPTKSET PNVSEVIEEQ QMPKVVAPTP
201: EQIIAIKAAI VNSQTLEEVA RLEKALKSGQ LPADLLLDNV DEKHEDMIHD DRGQADGESN DTQEQRNTDS ASMEQVYGHI DMCPSKH

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.