Factsheet for TraesCS5B01G544100.2

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G115300.1
TraesCS4B01G188900.1
TraesCS4D01G190200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	TraesCS4A01G115300.1	AT2G30260.1	21798944
AT1G09760.1	TraesCS4B01G188900.1	AT2G30260.1	21798944
AT1G09760.1	TraesCS4D01G190200.1	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G543700.1	Wheat	cytosol	64.13	82.81
HORVU5Hr1G122640.6	Barley	cytosol	62.77	81.34
Os02t0234800-01	Rice	nucleus	57.88	75.0
EER93090	Sorghum	cytosol	57.34	74.56
AT1G09760.1	Thale cress	cytosol	41.58	61.45
CDX94952	Canola	cytosol	40.76	57.92
CDY20674	Canola	cytosol	40.22	57.81
Bra030797.1-P	Field mustard	cytosol	39.67	57.03
CDY31066	Canola	cytosol	39.67	57.03
CDX93483	Canola	cytosol	40.49	56.65
Bra019994.1-P	Field mustard	cytosol	39.95	56.32
GSMUA_Achr7P02600_001	Banana	cytosol	42.66	55.28
PGSC0003DMT400036729	Potato	cytosol	41.58	53.5
VIT_01s0150g00590.t01	Wine grape	cytosol	41.58	53.31
Solyc03g117940.2.1	Tomato	nucleus	41.3	53.15
KRH33434	Soybean	cytosol	41.03	52.61
KRG90206	Soybean	nucleus	40.76	52.26
CDY22621	Canola	cytosol	41.03	52.25
Bra031683.1-P	Field mustard	cytosol	41.03	49.35
CDY06372	Canola	cytosol	41.03	48.87
TraesCS5B01G003200.2	Wheat	cytosol	34.78	31.14
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	55.43	28.37

Protein Annotations

EnsemblPlants:TraesCS5B01G544100.2	EnsemblPlantsGene:TraesCS5B01G544100	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR10552
PANTHER:PTHR10552:SF6	PFAM:PF14580	SEG:seg	SUPFAM:SSF52058	MapMan:16.4.1.2.1	:

Description

No Description!

Coordinates

chr5B:+:696715535..696720635

Molecular Weight (calculated)

42008.3 Da

IEP (calculated)

6.022

GRAVY (calculated)

-0.408

Length

368 amino acids

Sequence
(BLAST)

001: MVRLSADLIW HFFNAVKERE LDLRGNKIAF IENIGATEDK FDMIDLSDDE IVKLENFPFM NRLGTLLINN NRITRINPNL GEFLHKMHTL VLTNNRLTSL
101: AEIDPLASLP KLQFLSLLDN TVTKQLDYRL YVIHKLKHLR LLDFKIVKQQ EKCEAAQKFH SKETEEGAKR AATKAYTLGQ VVDSHGTTKD QGAKVVAPTP
201: AQITAIKFEA PYAMYWHTLV CHRDQALSTG QVPAQFALPK PDTNMAQASE EAEAEKMETD GQDQEDGADE QKQTDESALI QEAAIVNSQP LDELTRLEKE
301: FLGADLDCIY DTLSNIGSYI YKNFERAPFN FIVSWRKRFF RGLHILPPPR RQEPGKPYAL TMLSCYYL

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.