Factsheet for Bra030797.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	Bra018324.1-P	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31066	Canola	cytosol	99.22	99.22
Bra019994.1-P	Field mustard	cytosol	90.62	88.89
AT1G09760.1	Thale cress	cytosol	85.94	88.35
Bra031683.1-P	Field mustard	cytosol	93.75	78.43
GSMUA_Achr7P02600_001	Banana	cytosol	72.66	65.49
PGSC0003DMT400036729	Potato	cytosol	72.66	65.03
KRH33434	Soybean	cytosol	72.66	64.81
Solyc03g117940.2.1	Tomato	nucleus	72.27	64.69
KRG90206	Soybean	nucleus	71.48	63.76
EER93090	Sorghum	cytosol	70.31	63.6
Os02t0234800-01	Rice	nucleus	70.31	63.38
VIT_01s0150g00590.t01	Wine grape	cytosol	70.31	62.72
HORVU5Hr1G122640.6	Barley	cytosol	67.58	60.92
TraesCS5B01G543700.1	Wheat	cytosol	67.58	60.7
TraesCS5D01G544000.1	Wheat	cytosol	67.58	60.7
TraesCS4A01G329300.1	Wheat	nucleus	67.19	60.35
TraesCS5B01G544100.2	Wheat	cytosol, nucleus, peroxisome	57.03	39.67
TraesCS5B01G003200.2	Wheat	cytosol	45.31	28.22
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	69.53	24.76

Protein Annotations

EnsemblPlants:Bra030797.1	EnsemblPlants:Bra030797.1-P	EnsemblPlantsGene:Bra030797	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:U2A'_phosphoprotein32A_C
ncoils:Coil	PANTHER:PTHR10552	PANTHER:PTHR10552:SF6	PFAM:PF14580	PFscan:PS51450	SEG:seg
SMART:SM00446	SUPFAM:SSF52058	UniParc:UPI00025465F1	UniProt:M4EPS6	MapMan:16.4.1.2.1	:

Description

AT1G09760 (E=3e-086) U2A' | U2A' (U2 small nuclear ribonucleoprotein A); protein binding

Coordinates

chrA08:+:20333134..20334616

Molecular Weight (calculated)

28454.4 Da

IEP (calculated)

5.229

GRAVY (calculated)

-0.156

Length

256 amino acids

Sequence
(BLAST)

001: MVKLTADLVW NSPHFFNAIK ERELELRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PLLNRLGTLI VNNNRITRIN PNIGEFLPKL HTLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKPN YRLYVIHKLK SLRVLDFIKV KAKERAEAAA LFSSKEAEEE VKKVSQEVAQ KVSDTTEDAE APKVVAPTQE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLVVPDPA SGVNDGSGPM EVGLSY

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.