Factsheet for Zm00001d034858_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d028804_P001
Zm00001d047699_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	Zm00001d028804_P001	AT2G30260.1	21798944
AT1G09760.1	Zm00001d047699_P001	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93090	Sorghum	cytosol	36.58	92.93
Os02t0234800-01	Rice	nucleus	33.94	85.92
TraesCS5D01G544000.1	Wheat	cytosol	31.71	80.0
TraesCS5B01G543700.1	Wheat	cytosol	31.71	80.0
TraesCS4A01G329300.1	Wheat	nucleus	31.57	79.65
HORVU5Hr1G122640.6	Barley	cytosol	31.15	78.87
AT1G09760.1	Thale cress	cytosol	24.76	71.49
CDY20674	Canola	cytosol	24.9	69.92
CDX94952	Canola	cytosol	25.17	69.88
Bra030797.1-P	Field mustard	cytosol	24.76	69.53
CDY31066	Canola	cytosol	24.76	69.53
GSMUA_Achr7P02600_001	Banana	cytosol	27.26	69.01
Bra019994.1-P	Field mustard	cytosol	25.03	68.97
CDX93483	Canola	cytosol	25.17	68.82
CDY22621	Canola	cytosol	25.73	64.01
VIT_01s0150g00590.t01	Wine grape	cytosol	25.45	63.76
PGSC0003DMT400036729	Potato	cytosol	25.31	63.64
Solyc03g117940.2.1	Tomato	nucleus	25.17	63.29
KRG90206	Soybean	nucleus	25.17	63.07
KRH33434	Soybean	cytosol	24.9	62.37
Bra031683.1-P	Field mustard	cytosol	25.17	59.15
CDY06372	Canola	cytosol	25.17	58.58
TraesCS5B01G544100.2	Wheat	cytosol, nucleus, peroxisome	28.37	55.43
TraesCS5B01G003200.2	Wheat	cytosol	19.89	34.79

Protein Annotations

EntrezGene:100273115	MapMan:16.4.1.2.1	Gene3D:3.80.10.10	UniProt:A0A1D6LBZ6	InterPro:Frigida	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	ProteinID:ONM11620.1	PFAM:PF07899	PFAM:PF14580	PFscan:PS51450	PANTHER:PTHR31791
PANTHER:PTHR31791:SF28	SUPFAM:SSF52058	UniParc:UPI0008450955	EnsemblPlantsGene:Zm00001d034858	EnsemblPlants:Zm00001d034858_P002	EnsemblPlants:Zm00001d034858_T002
SEG:seg	:	:	:	:	:

Description

Inactive protein FRIGIDA

Coordinates

chr1:+:303927049..303933356

Molecular Weight (calculated)

78744.0 Da

IEP (calculated)

5.207

GRAVY (calculated)

-0.389

Length

719 amino acids

Sequence
(BLAST)

001: MVRLTADLIW KSPHFFNAVK ERELDLRGNK IAVIENVGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL VNNNRITRIN PNLGEFLPKL HTLVLTNNRL
101: TNLAEIDPLA SLPKLQFLSL LDNTVTKQPD YRLYVIHKLK HLRLLDFKKV KQQERVAAAK KFHSKEAEEE AKKVPAKTFT PGLPDAQDIT MEPQGPKVVA
201: PTPEQITAIK AAIANAHTLE EAARLEQLWL LTMYLYLLCA QVLSTGQVPA EFAVPRPDAN MAEASDGAEK MDTDGENQEG DQWNSVILDV ASIGATFAAL
301: FPGPGSDPKP YHPAPEPDRE PEPPLAPQPE PGPNAAPAPE PRWEREPSPS PGPGSDPKPY LPAPAPEPDR EPEPTLAPPQ SEPGLNAAAA PEPRWEREPS
401: PSPEPAPAPN PDRERKDGGG AGAASAADLE HRCKQMNCGG VRRFVIVHLR DGGGEWLRQV VPGALRRAPD PAALVFHAVG RYYIRAESPD AEAACALLLE
501: LYVRAGCPRL RRGRGSEAAE LLLRQEAREA ALTWRSRLLR VSGAVGDAPG AAGARGLALF MAAFGVPAEF PAQELCDLVD AAQASACVQV LKASKLFAKK
601: MRDVVIEMIN KAMYLQAMRI ILVFEFQEAF PLAPTLALII EKLEHDTKDE NEGQASERDE DDLALLSSIS KCMEDHKLSP SEFTTFAAKI ALLEERVGKA
701: RRQACSTGAK RKRPEECVE

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.