CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY02052
CDY10721

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	CDY02052	AT2G30260.1	21798944
AT1G09760.1	CDY10721	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93483	Canola	cytosol	98.84	97.34
Bra019994.1-P	Field mustard	cytosol	94.21	93.49
CDY20674	Canola	cytosol	88.42	89.45
CDY31066	Canola	cytosol	88.42	89.45
AT1G09760.1	Thale cress	cytosol	85.71	89.16
CDY22621	Canola	cytosol	89.96	80.62
CDY06372	Canola	cytosol	89.58	75.08
GSMUA_Achr7P02600_001	Banana	cytosol	72.59	66.2
PGSC0003DMT400036729	Potato	cytosol	72.2	65.38
KRH33434	Soybean	cytosol	72.2	65.16
KRG90206	Soybean	nucleus	72.2	65.16
Solyc03g117940.2.1	Tomato	nucleus	71.43	64.69
EER93090	Sorghum	cytosol	69.88	63.96
VIT_01s0150g00590.t01	Wine grape	cytosol	70.66	63.76
Os02t0234800-01	Rice	nucleus	69.88	63.73
HORVU5Hr1G122640.6	Barley	cytosol	67.18	61.27
TraesCS5B01G543700.1	Wheat	cytosol	67.18	61.05
TraesCS5D01G544000.1	Wheat	cytosol	67.18	61.05
TraesCS4A01G329300.1	Wheat	nucleus	66.8	60.7
TraesCS5B01G544100.2	Wheat	cytosol, nucleus, peroxisome	57.92	40.76
TraesCS5B01G003200.2	Wheat	cytosol	45.17	28.47
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	69.88	25.17

Protein Annotations

EnsemblPlants:CDX94952	EnsemblPlantsGene:GSBRNA2T00100436001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:U2A'_phosphoprotein32A_C	PANTHER:PTHR10552
PANTHER:PTHR10552:SF6	PFAM:PF14580	PFscan:PS51450	ProteinID:CDX94952	ProteinID:CDX94952.1	SEG:seg
SMART:SM00446	SUPFAM:SSF52058	UniParc:UPI0004EB27C4	MapMan:16.4.1.2.1	:	:

Description

BnaC05g07190D

Coordinates

chrLK031886:+:327163..329635

Molecular Weight (calculated)

29090.2 Da

IEP (calculated)

5.479

GRAVY (calculated)

-0.271

Length

259 amino acids

Sequence
(BLAST)

001: MVKLTADLIW NSPHFFNAVK ERELELRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PLLNRLGTLI INNNRITRIN PNIGEFLPKL HTLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKPN YRLYVIHKLK SLRALDFIKV KAKERAEAAA LFSSKEVEEE VKKVSREEVQ KVSDSTEEPD TPKVVAPTQE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGMIVPDLV HSNVATKDGK PSSGDPMEE

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.