Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0004g07530.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09760.1 | VIT_06s0004g07530.t01 | AT2G30260.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG90206 | Soybean | nucleus | 77.0 | 77.0 |
| AT1G09760.1 | Thale cress | cytosol | 65.16 | 75.1 |
| KRH33434 | Soybean | cytosol | 73.87 | 73.87 |
| PGSC0003DMT400036729 | Potato | cytosol | 71.43 | 71.68 |
| CDY20674 | Canola | cytosol | 63.41 | 71.09 |
| Solyc03g117940.2.1 | Tomato | nucleus | 70.73 | 70.98 |
| CDX94952 | Canola | cytosol | 63.76 | 70.66 |
| CDX93483 | Canola | cytosol | 64.46 | 70.34 |
| Bra030797.1-P | Field mustard | cytosol | 62.72 | 70.31 |
| CDY31066 | Canola | cytosol | 62.72 | 70.31 |
| GSMUA_Achr7P02600_001 | Banana | cytosol | 69.34 | 70.07 |
| Bra019994.1-P | Field mustard | cytosol | 63.07 | 69.35 |
| Os02t0234800-01 | Rice | nucleus | 65.85 | 66.55 |
| EER93090 | Sorghum | cytosol | 65.51 | 66.43 |
| CDY22621 | Canola | cytosol | 63.07 | 62.63 |
| HORVU5Hr1G122640.6 | Barley | cytosol | 61.67 | 62.32 |
| TraesCS4A01G329300.1 | Wheat | nucleus | 61.67 | 62.11 |
| TraesCS5B01G543700.1 | Wheat | cytosol | 61.67 | 62.11 |
| TraesCS5D01G544000.1 | Wheat | cytosol | 61.67 | 62.11 |
| Bra031683.1-P | Field mustard | cytosol | 64.46 | 60.46 |
| CDY06372 | Canola | cytosol | 64.11 | 59.55 |
| TraesCS5B01G544100.2 | Wheat | cytosol, nucleus, peroxisome | 53.31 | 41.58 |
| TraesCS5B01G003200.2 | Wheat | cytosol | 43.21 | 30.17 |
| Zm00001d034858_P002 | Maize | cytosol, nucleus, plastid | 63.76 | 25.45 |
Protein Annotations
| EntrezGene:100264276 | wikigene:100264276 | MapMan:16.4.1.2.1 | Gene3D:3.80.10.10 | ProteinID:CBI29303 | ProteinID:CBI29303.3 |
| ncoils:Coil | UniProt:D7TFN0 | EMBL:FN595770 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009409 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009987 |
| GO:GO:0015030 | InterPro:IPR001611 | InterPro:IPR032675 | EntrezGene:LOC100264276 | wikigene:LOC100264276 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | PFAM:PF14580 | PFscan:PS51450 | PANTHER:PTHR10552 | PANTHER:PTHR10552:SF6 | SUPFAM:SSF52058 |
| UniParc:UPI0001982B0F | ArrayExpress:VIT_01s0150g00590 | EnsemblPlantsGene:VIT_01s0150g00590 | EnsemblPlants:VIT_01s0150g00590.t01 | unigene:Vvi.3022 | RefSeq:XP_002275396 |
| RefSeq:XP_002275396.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:22898954..22922375
Molecular Weight (calculated)
32653.1 Da
IEP (calculated)
4.884
GRAVY (calculated)
-0.549
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRLTADLIW KSPHFFNAIR ERELDLRGNK VAVIENLGAT EDQFDTIDLS DNEIVKLENL PYLNRLGTLL INNNRITRIN PNIGEYLPKL HTLVLTNNRL
101: VNLAEIDPLS SFPKLQFLSL LDNNITKKPN YRLYVIHRLK SLRLLDFKKV KNKERLEAEN LFASKEVEEE AKQEPLKTFT PGEMPNALEP AEEQQIPKVV
201: GPSPEELIAI KAAIVNSQTL EEVARLEKAL KSGQLPADLK SLVENTRADV VNEKDDKMVS SNPNTSRDEP KTVEEQKNDD VAPMEQE
101: VNLAEIDPLS SFPKLQFLSL LDNNITKKPN YRLYVIHRLK SLRLLDFKKV KNKERLEAEN LFASKEVEEE AKQEPLKTFT PGEMPNALEP AEEQQIPKVV
201: GPSPEELIAI KAAIVNSQTL EEVARLEKAL KSGQLPADLK SLVENTRADV VNEKDDKMVS SNPNTSRDEP KTVEEQKNDD VAPMEQE
001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE
Arabidopsis Description
U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.