Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr3P09930_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09760.1 | GSMUA_Achr10P... | AT2G30260.1 | 21798944 |
| AT1G09760.1 | GSMUA_Achr3P09930_001 | AT2G30260.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G09760.1 | Thale cress | cytosol | 65.49 | 74.7 |
| CDY20674 | Canola | cytosol | 66.55 | 73.83 |
| Bra019994.1-P | Field mustard | cytosol | 66.9 | 72.8 |
| Bra030797.1-P | Field mustard | cytosol | 65.49 | 72.66 |
| CDY31066 | Canola | cytosol | 65.49 | 72.66 |
| CDX94952 | Canola | cytosol | 66.2 | 72.59 |
| Os02t0234800-01 | Rice | nucleus | 72.18 | 72.18 |
| CDX93483 | Canola | cytosol | 66.2 | 71.48 |
| PGSC0003DMT400036729 | Potato | cytosol | 71.48 | 70.98 |
| Solyc03g117940.2.1 | Tomato | nucleus | 71.13 | 70.63 |
| EER93090 | Sorghum | cytosol | 70.07 | 70.32 |
| KRG90206 | Soybean | nucleus | 70.07 | 69.34 |
| VIT_01s0150g00590.t01 | Wine grape | cytosol | 70.07 | 69.34 |
| KRH33434 | Soybean | cytosol | 68.66 | 67.94 |
| HORVU5Hr1G122640.6 | Barley | cytosol | 66.55 | 66.55 |
| TraesCS4A01G329300.1 | Wheat | nucleus | 66.55 | 66.32 |
| TraesCS5B01G543700.1 | Wheat | cytosol | 66.2 | 65.96 |
| TraesCS5D01G544000.1 | Wheat | cytosol | 66.2 | 65.96 |
| CDY22621 | Canola | cytosol | 66.55 | 65.4 |
| CDY06372 | Canola | cytosol | 67.25 | 61.81 |
| Bra031683.1-P | Field mustard | cytosol | 66.55 | 61.76 |
| TraesCS5B01G544100.2 | Wheat | cytosol, nucleus, peroxisome | 55.28 | 42.66 |
| TraesCS5B01G003200.2 | Wheat | cytosol | 44.01 | 30.41 |
| Zm00001d034858_P002 | Maize | cytosol, nucleus, plastid | 69.01 | 27.26 |
Protein Annotations
| MapMan:16.4.1.2.1 | Gene3D:3.80.10.10 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009409 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0015030 |
| EnsemblPlantsGene:GSMUA_Achr7G02600_001 | EnsemblPlants:GSMUA_Achr7P02600_001 | EnsemblPlants:GSMUA_Achr7T02600_001 | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | UniProt:M0TE50 | PFAM:PF14580 | PFscan:PS51450 | PANTHER:PTHR10552 | PANTHER:PTHR10552:SF6 |
| SUPFAM:SSF52058 | UniParc:UPI0002962D01 | SEG:seg | : | : | : |
Description
U2 small nuclear ribonucleoprotein A' [Source:GMGC_GENE;Acc:GSMUA_Achr7G02600_001]
Coordinates
chr7:+:2063535..2070335
Molecular Weight (calculated)
32232.5 Da
IEP (calculated)
4.618
GRAVY (calculated)
-0.500
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRLTADLIW KSPHFFNAIK ERELDLRGNK IAVMENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNIGEFVPKL HTLILTNNRL
101: VNLMEIDPLA SLPKLQFLSL LDNNITKKPN YRFYVIYKLK NLRLLDFRKV KQKERTEAER LFASKEAEEE AKKVSAKTFT PSEVPDVPDS SKVEQAPPKV
201: APTLEQITAI KAAIVNSQTL EEVARLEKAL KLGQIPEEFM NLGKEATTAS GDAVVDGMDT DDQNEVTEAQ EQEQNEEAQP IEQD
101: VNLMEIDPLA SLPKLQFLSL LDNNITKKPN YRFYVIYKLK NLRLLDFRKV KQKERTEAER LFASKEAEEE AKKVSAKTFT PSEVPDVPDS SKVEQAPPKV
201: APTLEQITAI KAAIVNSQTL EEVARLEKAL KLGQIPEEFM NLGKEATTAS GDAVVDGMDT DDQNEVTEAQ EQEQNEEAQP IEQD
001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE
Arabidopsis Description
U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.