CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY02052
CDY10721

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	CDY02052	AT2G30260.1	21798944
AT1G09760.1	CDY10721	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20674	Canola	cytosol	77.67	93.75
CDY31066	Canola	cytosol	77.67	93.75
CDY22621	Canola	cytosol	84.47	90.31
Bra031683.1-P	Field mustard	cytosol	89.0	89.87
CDX93483	Canola	cytosol	76.38	89.73
CDX94952	Canola	cytosol	75.08	89.58
AT1G09760.1	Thale cress	cytosol	71.84	89.16
GSMUA_Achr7P02600_001	Banana	cytosol	61.81	67.25
KRG90206	Soybean	nucleus	61.81	66.55
PGSC0003DMT400036729	Potato	cytosol	61.49	66.43
KRH33434	Soybean	cytosol	61.49	66.2
Solyc03g117940.2.1	Tomato	nucleus	61.16	66.08
EER93090	Sorghum	cytosol	59.22	64.66
VIT_01s0150g00590.t01	Wine grape	cytosol	59.55	64.11
Os02t0234800-01	Rice	nucleus	58.58	63.73
HORVU5Hr1G122640.6	Barley	cytosol	57.28	62.32
TraesCS5B01G543700.1	Wheat	cytosol	56.96	61.75
TraesCS5D01G544000.1	Wheat	cytosol	56.96	61.75
TraesCS4A01G329300.1	Wheat	nucleus	56.63	61.4
TraesCS5B01G544100.2	Wheat	cytosol, nucleus, peroxisome	48.87	41.03
TraesCS5B01G003200.2	Wheat	cytosol	38.51	28.95
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	58.58	25.17

Protein Annotations

MapMan:16.4.1.2.1	Gene3D:3.80.10.10	EnsemblPlants:CDY06372	ProteinID:CDY06372	ProteinID:CDY06372.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00122309001	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	PFAM:PF14580	PFscan:PS51450	PANTHER:PTHR10552	PANTHER:PTHR10552:SF6	SMART:SM00446
SUPFAM:SSF52058	InterPro:U2A'_phosphoprotein32A_C	UniParc:UPI0004EDAF09	SEG:seg	:	:

Description

BnaA09g48310D

Coordinates

chrLK031968:-:1015626..1017887

Molecular Weight (calculated)

34360.0 Da

IEP (calculated)

6.815

GRAVY (calculated)

0.032

Length

309 amino acids

Sequence
(BLAST)

001: MVKLTADLIW NSPHFFNAIK ERELELRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PLLNRLGTLI INNNRITRIN PNIGEFLPKL HTLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKPN YRLYVIHKLK SLRVLDFIKV KAKERAEAAA LFSSKEAEEE VKKVSQQEVQ KVSDATKESE APKVVAPTQE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIVPDPA SGVNDGSGPM EDLSRMLWSL VKFIVAGFLV IRISVTDQSV AVAAPMLTEI MSGNSLGNFK
301: LLVLKSICF

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.