Factsheet for TraesCS4A01G329300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G115300.1
TraesCS4B01G188900.1
TraesCS4D01G190200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	TraesCS4A01G115300.1	AT2G30260.1	21798944
AT1G09760.1	TraesCS4B01G188900.1	AT2G30260.1	21798944
AT1G09760.1	TraesCS4D01G190200.1	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G544000.1	Wheat	cytosol	99.3	99.3
TraesCS5B01G543700.1	Wheat	cytosol	99.3	99.3
HORVU5Hr1G122640.6	Barley	cytosol	96.84	97.18
Os02t0234800-01	Rice	nucleus	85.96	86.27
EER93090	Sorghum	cytosol	84.91	85.51
AT1G09760.1	Thale cress	cytosol	62.46	71.49
CDY20674	Canola	cytosol	61.4	68.36
Bra030797.1-P	Field mustard	cytosol	60.35	67.19
CDY31066	Canola	cytosol	60.35	67.19
CDX94952	Canola	cytosol	60.7	66.8
GSMUA_Achr7P02600_001	Banana	cytosol	66.32	66.55
Bra019994.1-P	Field mustard	cytosol	60.35	65.9
CDX93483	Canola	cytosol	60.35	65.4
PGSC0003DMT400036729	Potato	cytosol	63.51	63.29
Solyc03g117940.2.1	Tomato	nucleus	63.16	62.94
VIT_01s0150g00590.t01	Wine grape	cytosol	62.11	61.67
CDY22621	Canola	cytosol	61.4	60.55
KRG90206	Soybean	nucleus	60.7	60.28
KRH33434	Soybean	cytosol	60.7	60.28
Bra031683.1-P	Field mustard	cytosol	61.05	56.86
CDY06372	Canola	cytosol	61.4	56.63
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	79.65	31.57

Protein Annotations

MapMan:16.4.1.2.1	Gene3D:3.80.10.10	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009987	GO:GO:0015030	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF14580
PANTHER:PTHR10552	PANTHER:PTHR10552:SF6	SUPFAM:SSF52058	EnsemblPlantsGene:TraesCS4A01G329300	EnsemblPlants:TraesCS4A01G329300.1	SEG:seg

Description

No Description!

Coordinates

chr4A:-:614411595..614415624

Molecular Weight (calculated)

31915.9 Da

IEP (calculated)

4.773

GRAVY (calculated)

-0.538

Length

285 amino acids

Sequence
(BLAST)

001: MVRLNADLIW KSPHFFNAIK ERELDLRGNK IAIIENIGAT EDQFDTIDLS DNEIVKLENF PFMNRLGTLL INNNRITRIN PNLGEFLPKM HTLVLTNNRL
101: TSLAEIDPLA SLPKLQFLSL LDNTVTKQPD YRLYVIHKLK HLRLLDFKKV KQQERADAAQ KFHSKEAEEA AKKVAAKAYT PVVMDSQGTT KDQGPKVVAP
201: TPAQITAIKA AIVNSQTLDE VTRLEKALST GQVPAEFALP KPDTNMAEAS EEAEAEKMET DGQDQEEDGA DEQKQADEST PIQED

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.