Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 27224218 nucleus: 27291164 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09760.1 | KRH17128 | AT2G30260.1 | 21798944 |
| AT1G09760.1 | KRH72767 | AT2G30260.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33434 | Soybean | cytosol | 83.97 | 83.97 |
| VIT_01s0150g00590.t01 | Wine grape | cytosol | 77.0 | 77.0 |
| AT1G09760.1 | Thale cress | cytosol | 66.55 | 76.71 |
| CDY20674 | Canola | cytosol | 64.46 | 72.27 |
| CDX94952 | Canola | cytosol | 65.16 | 72.2 |
| CDX93483 | Canola | cytosol | 65.85 | 71.86 |
| CDY31066 | Canola | cytosol | 63.76 | 71.48 |
| Bra030797.1-P | Field mustard | cytosol | 63.76 | 71.48 |
| Bra019994.1-P | Field mustard | cytosol | 64.81 | 71.26 |
| GSMUA_Achr7P02600_001 | Banana | cytosol | 69.34 | 70.07 |
| PGSC0003DMT400036729 | Potato | cytosol | 69.34 | 69.58 |
| Solyc03g117940.2.1 | Tomato | nucleus | 69.34 | 69.58 |
| CDY22621 | Canola | cytosol | 66.2 | 65.74 |
| Os02t0234800-01 | Rice | nucleus | 64.81 | 65.49 |
| EER93090 | Sorghum | cytosol | 63.76 | 64.66 |
| Bra031683.1-P | Field mustard | cytosol | 66.55 | 62.42 |
| CDY06372 | Canola | cytosol | 66.55 | 61.81 |
| TraesCS4A01G329300.1 | Wheat | nucleus | 60.28 | 60.7 |
| HORVU5Hr1G122640.6 | Barley | cytosol | 59.93 | 60.56 |
| TraesCS5B01G543700.1 | Wheat | cytosol | 59.93 | 60.35 |
| TraesCS5D01G544000.1 | Wheat | cytosol | 59.93 | 60.35 |
| TraesCS5B01G544100.2 | Wheat | cytosol, nucleus, peroxisome | 52.26 | 40.76 |
| TraesCS5B01G003200.2 | Wheat | cytosol | 41.46 | 28.95 |
| Zm00001d034858_P002 | Maize | cytosol, nucleus, plastid | 63.07 | 25.17 |
Protein Annotations
| EntrezGene:100803110 | MapMan:16.4.1.2.1 | Gene3D:3.80.10.10 | EMBL:ACUP02012566 | EMBL:BT093875 | UniProt:C6T8S2 |
| EnsemblPlantsGene:GLYMA_20G075100 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR001611 | InterPro:IPR032675 | EnsemblPlants:KRG90206 |
| ProteinID:KRG90206 | ProteinID:KRG90206.1 | ProteinID:KRG90207.1 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PFAM:PF14580 |
| PFscan:PS51450 | PANTHER:PTHR10552 | PANTHER:PTHR10552:SF6 | SUPFAM:SSF52058 | UniParc:UPI0001B162EA | SEG:seg |
Description
hypothetical protein
Coordinates
chr20:-:27160728..27167492
Molecular Weight (calculated)
32558.8 Da
IEP (calculated)
4.915
GRAVY (calculated)
-0.479
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRLTADLIW KSPHFFNTIK ERELDLRGNK IAVIENLGAT EDQFDTIDLS DNEIVKLENV PYLNRLGTML INNNRITRIN PNIGEFLPNL HTLVLTNNRI
101: VNLVEIDPLA SLPKLHFLSL LDNNITKKPN YRLYVINNLK SLRVLDFKKV KNKERLEAKN LFASKEVIEE IQRTPAKTFS TGETPNVSEA IEEQQTPKVV
201: APTPEQIIAI KAAIVNSQTL EEVARLEKAL KSGQLPADLI SLSDNIMLDN VDEKHEDMIH DDRSQADGKS NDTQEQRNTD SASMEQD
101: VNLVEIDPLA SLPKLHFLSL LDNNITKKPN YRLYVINNLK SLRVLDFKKV KNKERLEAKN LFASKEVIEE IQRTPAKTFS TGETPNVSEA IEEQQTPKVV
201: APTPEQIIAI KAAIVNSQTL EEVARLEKAL KSGQLPADLI SLSDNIMLDN VDEKHEDMIH DDRSQADGKS NDTQEQRNTD SASMEQD
001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE
Arabidopsis Description
U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.