Factsheet for Solyc03g117940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g082360.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	Solyc06g082360.2.1	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036729	Potato	cytosol	98.6	98.6
AT1G09760.1	Thale cress	cytosol	65.38	75.1
CDY20674	Canola	cytosol	65.73	73.44
Bra030797.1-P	Field mustard	cytosol	64.69	72.27
CDY31066	Canola	cytosol	64.69	72.27
CDX94952	Canola	cytosol	64.69	71.43
GSMUA_Achr7P02600_001	Banana	cytosol	70.63	71.13
CDX93483	Canola	cytosol	65.38	71.1
VIT_01s0150g00590.t01	Wine grape	cytosol	70.98	70.73
Bra019994.1-P	Field mustard	cytosol	64.34	70.5
KRG90206	Soybean	nucleus	69.58	69.34
KRH33434	Soybean	cytosol	68.53	68.29
Os02t0234800-01	Rice	nucleus	65.38	65.85
EER93090	Sorghum	cytosol	65.03	65.72
CDY22621	Canola	cytosol	65.03	64.36
TraesCS4A01G329300.1	Wheat	nucleus	62.94	63.16
HORVU5Hr1G122640.6	Barley	cytosol	62.59	63.03
TraesCS5B01G543700.1	Wheat	cytosol	62.59	62.81
TraesCS5D01G544000.1	Wheat	cytosol	62.59	62.81
Bra031683.1-P	Field mustard	cytosol	66.08	61.76
CDY06372	Canola	cytosol	66.08	61.16
TraesCS5B01G544100.2	Wheat	cytosol, nucleus, peroxisome	53.15	41.3
TraesCS5B01G003200.2	Wheat	cytosol	43.01	29.93
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	63.29	25.17

Protein Annotations

MapMan:16.4.1.2.1	Gene3D:3.80.10.10	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009987	GO:GO:0015030	InterPro:IPR032675	UniProt:K4BLU5	InterPro:LRR_dom_sf
PFAM:PF14580	PANTHER:PTHR10552	PANTHER:PTHR10552:SF6	SUPFAM:SSF52058	EnsemblPlantsGene:Solyc03g117940.2	EnsemblPlants:Solyc03g117940.2.1
UniParc:UPI0002767891	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:66919909..66923773

Molecular Weight (calculated)

32314.8 Da

IEP (calculated)

5.175

GRAVY (calculated)

-0.504

Length

286 amino acids

Sequence
(BLAST)

001: MVRLTADLIW KSPHFFNAIR ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL MNNNRITRIN PNIGEFLPKL HTLIITSNRL
101: TNLVEIDPLA SLPKLKFLSL LENNITKRPN YRLYVIHKLK SLRLLDFRKV KQKERLEASK LFASQEAVEQ VKKESVKTVP VEVAAPAEEP KEAQASKPVA
201: PTPEQIIAIK AAIVNSQTLE EVARLEQALK SGQLPADLNI GDHDVTAKKE DAKEDKMVTD SDDKANKVEE NVPEQTPDGP TDMEQE

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.