CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92401

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	EER92401	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0234800-01	Rice	nucleus	89.05	88.73
TraesCS4A01G329300.1	Wheat	nucleus	85.51	84.91
TraesCS5D01G544000.1	Wheat	cytosol	85.51	84.91
TraesCS5B01G543700.1	Wheat	cytosol	85.51	84.91
HORVU5Hr1G122640.6	Barley	cytosol	84.1	83.8
AT1G09760.1	Thale cress	cytosol	64.31	73.09
CDY20674	Canola	cytosol	64.31	71.09
Bra030797.1-P	Field mustard	cytosol	63.6	70.31
CDY31066	Canola	cytosol	63.6	70.31
GSMUA_Achr7P02600_001	Banana	cytosol	70.32	70.07
CDX94952	Canola	cytosol	63.96	69.88
Bra019994.1-P	Field mustard	cytosol	63.25	68.58
CDX93483	Canola	cytosol	63.6	68.44
VIT_01s0150g00590.t01	Wine grape	cytosol	66.43	65.51
PGSC0003DMT400036729	Potato	cytosol	66.08	65.38
Solyc03g117940.2.1	Tomato	nucleus	65.72	65.03
KRG90206	Soybean	nucleus	64.66	63.76
CDY22621	Canola	cytosol	64.31	62.98
KRH33434	Soybean	cytosol	62.9	62.02
CDY06372	Canola	cytosol	64.66	59.22
Bra031683.1-P	Field mustard	cytosol	63.96	59.15
TraesCS5B01G544100.2	Wheat	cytosol, nucleus, peroxisome	74.56	57.34
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	92.93	36.58
TraesCS5B01G003200.2	Wheat	cytosol	51.24	35.28

Protein Annotations

MapMan:16.4.1.2.1	Gene3D:3.80.10.10	EntrezGene:8061406	UniProt:C5WSV0	EnsemblPlants:EER93090	ProteinID:EER93090
ProteinID:EER93090.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005730	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987	GO:GO:0015030	InterPro:IPR001611
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF14580	PFscan:PS51450	PANTHER:PTHR10552
PANTHER:PTHR10552:SF6	EnsemblPlantsGene:SORBI_3001G010600	SUPFAM:SSF52058	unigene:Sbi.4675	UniParc:UPI0001A8281E	RefSeq:XP_002466092.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:934690..938671

Molecular Weight (calculated)

31632.7 Da

IEP (calculated)

4.917

GRAVY (calculated)

-0.491

Length

283 amino acids

Sequence
(BLAST)

001: MVRLTADLIW KSPHFFNAIK ERELDLRGNK IAVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL VNNNRITRIN PNLGEFLPKL HTLVLTNNRL
101: TNLAEIDPLA SLPKLQFLSL LDNTVTKQPD YRLYVIHKLK HLRLLDFKKV KQQERVAAAK KFHSKEAEEE AKKVAVKTFT PGLPDAQDIT MEPQGPKVVA
201: PTPEQITAIK AAIVNAHTLE EAARLEQVLS TGQVPAEFAV PKPDANMAEA SEGAEKMDTD GQNQEGEADG QKQDDESTPI QED

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.