Factsheet for TraesCS5B01G543700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G115300.1
TraesCS4B01G188900.1
TraesCS4D01G190200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	TraesCS4A01G115300.1	AT2G30260.1	21798944
AT1G09760.1	TraesCS4B01G188900.1	AT2G30260.1	21798944
AT1G09760.1	TraesCS4D01G190200.1	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G544000.1	Wheat	cytosol	100.0	100.0
TraesCS4A01G329300.1	Wheat	nucleus	99.3	99.3
HORVU5Hr1G122640.6	Barley	cytosol	96.84	97.18
Os02t0234800-01	Rice	nucleus	85.96	86.27
EER93090	Sorghum	cytosol	84.91	85.51
AT1G09760.1	Thale cress	cytosol	62.81	71.89
CDY20674	Canola	cytosol	61.05	67.97
Bra030797.1-P	Field mustard	cytosol	60.7	67.58
CDY31066	Canola	cytosol	60.7	67.58
CDX94952	Canola	cytosol	61.05	67.18
Bra019994.1-P	Field mustard	cytosol	60.7	66.28
GSMUA_Achr7P02600_001	Banana	cytosol	65.96	66.2
CDX93483	Canola	cytosol	60.7	65.78
TraesCS5B01G544100.2	Wheat	cytosol, nucleus, peroxisome	82.81	64.13
PGSC0003DMT400036729	Potato	cytosol	63.16	62.94
Solyc03g117940.2.1	Tomato	nucleus	62.81	62.59
VIT_01s0150g00590.t01	Wine grape	cytosol	62.11	61.67
CDY22621	Canola	cytosol	61.75	60.9
KRG90206	Soybean	nucleus	60.35	59.93
KRH33434	Soybean	cytosol	60.35	59.93
Bra031683.1-P	Field mustard	cytosol	61.4	57.19
CDY06372	Canola	cytosol	61.75	56.96
TraesCS5B01G003200.2	Wheat	cytosol	49.82	34.55
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	80.0	31.71

Protein Annotations

EnsemblPlants:TraesCS5B01G543700.1	EnsemblPlantsGene:TraesCS5B01G543700	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR10552
PANTHER:PTHR10552:SF6	PFAM:PF14580	SEG:seg	SUPFAM:SSF52058	MapMan:16.4.1.2.1	:

Description

No Description!

Coordinates

chr5B:-:696490757..696494898

Molecular Weight (calculated)

31913.9 Da

IEP (calculated)

4.773

GRAVY (calculated)

-0.528

Length

285 amino acids

Sequence
(BLAST)

001: MVRLNADLIW KSPHFFNAIK ERELDLRGNK IAIIENIGAT EDQFDTIDLS DNEIVKLENF PFMNRLGTLL INNNRITRIN PNLGEFLPKM HTLVLTNNRL
101: TSLAEIDPLA SLPKLQFLSL LDNTVTKQPD YRLYVIHKLK HLRLLDFKKV KQQERADAAQ KFHSKEAEEA AKKVAAKAYT PVVMDAQGTT KDQGPKVVAP
201: TPAQITAIKA AIINSQTLDE VTRLEKALST GQVPAEFALP KPDTNMAEAS EEAEAEKMET DGQDQEEDGA DEQKQADEST PIQED

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.