Factsheet for Bra019994.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	Bra018324.1-P	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93483	Canola	cytosol	95.79	95.06
CDX94952	Canola	cytosol	93.49	94.21
Bra030797.1-P	Field mustard	cytosol	88.89	90.62
AT1G09760.1	Thale cress	cytosol	85.06	89.16
Bra031683.1-P	Field mustard	cytosol	90.42	77.12
GSMUA_Achr7P02600_001	Banana	cytosol	72.8	66.9
KRG90206	Soybean	nucleus	71.26	64.81
KRH33434	Soybean	cytosol	71.26	64.81
PGSC0003DMT400036729	Potato	cytosol	70.88	64.69
Solyc03g117940.2.1	Tomato	nucleus	70.5	64.34
Os02t0234800-01	Rice	nucleus	69.35	63.73
EER93090	Sorghum	cytosol	68.58	63.25
VIT_01s0150g00590.t01	Wine grape	cytosol	69.35	63.07
HORVU5Hr1G122640.6	Barley	cytosol	66.28	60.92
TraesCS5B01G543700.1	Wheat	cytosol	66.28	60.7
TraesCS5D01G544000.1	Wheat	cytosol	66.28	60.7
TraesCS4A01G329300.1	Wheat	nucleus	65.9	60.35
TraesCS5B01G544100.2	Wheat	cytosol, nucleus, peroxisome	56.32	39.95
TraesCS5B01G003200.2	Wheat	cytosol	44.83	28.47
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	68.97	25.03

Protein Annotations

MapMan:16.4.1.2.1	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra019994	EnsemblPlants:Bra019994.1	EnsemblPlants:Bra019994.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
UniProt:M4DU01	PFAM:PF14580	PFscan:PS51450	PANTHER:PTHR10552	PANTHER:PTHR10552:SF6	SMART:SM00446
SUPFAM:SSF52058	InterPro:U2A'_phosphoprotein32A_C	UniParc:UPI000253E920	SEG:seg	:	:

Description

AT1G09760 (E=1e-078) U2A' | U2A' (U2 small nuclear ribonucleoprotein A); protein binding

Coordinates

chrA06:-:3340127..3341641

Molecular Weight (calculated)

29320.4 Da

IEP (calculated)

4.974

GRAVY (calculated)

-0.191

Length

261 amino acids

Sequence
(BLAST)

001: MVKLTADLIW NSPHFFNAVK ERELELRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PLLNRLGTLI INNNRITRIN PNIGEFLPKL HTLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKPN YRLYVIHKIK SLRVLDFIKV KAKERAEAAA LFSSKEAEEE VKKVSREEVQ KVPDSMEESE TPKVVAPTQE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIVPDLV HSNVADGEPS SGDPMEVDFL S

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.