Factsheet for TraesCS5B01G003200.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G115300.1
TraesCS4B01G188900.1
TraesCS4D01G190200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	TraesCS4A01G115300.1	AT2G30260.1	21798944
AT1G09760.1	TraesCS4B01G188900.1	AT2G30260.1	21798944
AT1G09760.1	TraesCS4D01G190200.1	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0234800-01	Rice	nucleus	35.52	51.41
EER93090	Sorghum	cytosol	35.28	51.24
TraesCS5B01G543700.1	Wheat	cytosol	34.55	49.82
AT1G09760.1	Thale cress	cytosol	28.22	46.59
Bra030797.1-P	Field mustard	cytosol	28.22	45.31
CDY20674	Canola	cytosol	28.22	45.31
CDY31066	Canola	cytosol	28.22	45.31
CDX94952	Canola	cytosol	28.47	45.17
Bra019994.1-P	Field mustard	cytosol	28.47	44.83
CDX93483	Canola	cytosol	28.47	44.49
GSMUA_Achr7P02600_001	Banana	cytosol	30.41	44.01
PGSC0003DMT400036729	Potato	cytosol	30.17	43.36
VIT_01s0150g00590.t01	Wine grape	cytosol	30.17	43.21
Solyc03g117940.2.1	Tomato	nucleus	29.93	43.01
KRH33434	Soybean	cytosol	29.44	42.16
KRG90206	Soybean	nucleus	28.95	41.46
CDY22621	Canola	cytosol	28.47	40.48
Bra031683.1-P	Field mustard	cytosol	28.95	38.89
CDY06372	Canola	cytosol	28.95	38.51
TraesCS5B01G544100.2	Wheat	cytosol, nucleus, peroxisome	31.14	34.78
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	34.79	19.89

Protein Annotations

EnsemblPlants:TraesCS5B01G003200.2	EnsemblPlantsGene:TraesCS5B01G003200	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR10552	PANTHER:PTHR10552:SF6
PFAM:PF14580	PFscan:PS51450	SUPFAM:SSF52058	MapMan:16.4.1.2.1	:	:

Description

No Description!

Coordinates

chr5B:-:4867289..4871533

Molecular Weight (calculated)

46306.4 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.174

Length

411 amino acids

Sequence
(BLAST)

001: MVVLKVINTA VKERLLDLRG SPRHAPCSLP LTHGSLLPHP PPTSASKVLC FAAAGREMSS IEDLGGTEDE FDTIDLSENM IAKLENFPCL NRLGTLVASD
101: NRINYICSNI GELLPKLHTL VLMSNDITTL AEIDPLAALP NLKSLYLLEN PVTETADYRL YVIHMLKHLM SLDFEKVKPQ ERTTAEYKFH SKEAREEVKK
201: TSAKAYTPMK PVGAQYITEK SCPKAVSPVP SIKAAIASSQ TLKEIGKIKT VLSTGQMAAE FAFFEPEIDM AEALEKTDKI KGQNHENRAD EQMSNEESTL
301: IQEVKVSMLN NWMIDIDQEI FGAGPDSIYV TQPRHMEEYS MISVLTCCIL NVYKNFQQTP FRFILSWRKR LFKKMHILPL PRMQISAHTW TLNYIIYDIP
401: LKLCACCAKH S

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.