Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030797.1-P | Field mustard | cytosol | 88.35 | 85.94 |
| CDY20674 | Canola | cytosol | 88.35 | 85.94 |
| CDY31066 | Canola | cytosol | 88.35 | 85.94 |
| CDX94952 | Canola | cytosol | 89.16 | 85.71 |
| Bra019994.1-P | Field mustard | cytosol | 89.16 | 85.06 |
| CDX93483 | Canola | cytosol | 89.56 | 84.79 |
| CDY22621 | Canola | cytosol | 89.56 | 77.16 |
| Bra031683.1-P | Field mustard | cytosol | 89.16 | 72.55 |
| CDY06372 | Canola | cytosol | 89.16 | 71.84 |
| KRH33434 | Soybean | cytosol | 77.11 | 66.9 |
| KRG90206 | Soybean | nucleus | 76.71 | 66.55 |
| PGSC0003DMT400036729 | Potato | cytosol | 75.5 | 65.73 |
| GSMUA_Achr7P02600_001 | Banana | cytosol | 74.7 | 65.49 |
| Solyc03g117940.2.1 | Tomato | nucleus | 75.1 | 65.38 |
| VIT_01s0150g00590.t01 | Wine grape | cytosol | 75.1 | 65.16 |
| Os02t0234800-01 | Rice | nucleus | 73.49 | 64.44 |
| EER93090 | Sorghum | cytosol | 73.09 | 64.31 |
| HORVU5Hr1G122640.6 | Barley | cytosol | 72.29 | 63.38 |
| TraesCS5B01G543700.1 | Wheat | cytosol | 71.89 | 62.81 |
| TraesCS5D01G544000.1 | Wheat | cytosol | 71.89 | 62.81 |
| TraesCS4A01G329300.1 | Wheat | nucleus | 71.49 | 62.46 |
| TraesCS5B01G544100.2 | Wheat | cytosol, nucleus, peroxisome | 61.45 | 41.58 |
| TraesCS5B01G003200.2 | Wheat | cytosol | 46.59 | 28.22 |
| Zm00001d034858_P002 | Maize | cytosol, nucleus, plastid | 71.49 | 24.76 |
Protein Annotations
| MapMan:16.4.1.2.1 | Gene3D:3.80.10.10 | EntrezGene:837505 | ProteinID:AAB60746.1 | ProteinID:AEE28489.1 | ArrayExpress:AT1G09760 |
| EnsemblPlantsGene:AT1G09760 | RefSeq:AT1G09760 | TAIR:AT1G09760 | RefSeq:AT1G09760-TAIR-G | EnsemblPlants:AT1G09760.1 | TAIR:AT1G09760.1 |
| EMBL:AY059902 | Unigene:At.71087 | EMBL:BT000143 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009409 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0015030 | GO:GO:0030529 | InterPro:IPR032675 | InterPro:LRR_dom_sf | RefSeq:NP_172447.1 |
| UniProt:P43333 | PFAM:PF14580 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10552 | PANTHER:PTHR10552:SF6 | SMART:SM00446 | SUPFAM:SSF52058 |
| Symbol:U2A' | InterPro:U2A'_phosphoprotein32A_C | UniParc:UPI0000000E4D | EMBL:X69137 | EMBL:Z18200 | SEG:seg |
Description
U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
Coordinates
chr1:-:3159125..3161692
Molecular Weight (calculated)
28043.0 Da
IEP (calculated)
5.856
GRAVY (calculated)
-0.239
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.