Factsheet for HORVU5Hr1G122640.6

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G055040.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	HORVU4Hr1G055040.1	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G544000.1	Wheat	cytosol	97.18	96.84
TraesCS5B01G543700.1	Wheat	cytosol	97.18	96.84
TraesCS4A01G329300.1	Wheat	nucleus	97.18	96.84
Os02t0234800-01	Rice	nucleus	84.86	84.86
EER93090	Sorghum	cytosol	83.8	84.1
AT1G09760.1	Thale cress	cytosol	63.38	72.29
CDY20674	Canola	cytosol	61.97	68.75
Bra030797.1-P	Field mustard	cytosol	60.92	67.58
CDY31066	Canola	cytosol	60.92	67.58
CDX94952	Canola	cytosol	61.27	67.18
GSMUA_Achr7P02600_001	Banana	cytosol	66.55	66.55
Bra019994.1-P	Field mustard	cytosol	60.92	66.28
CDX93483	Canola	cytosol	60.92	65.78
PGSC0003DMT400036729	Potato	cytosol	63.38	62.94
TraesCS5B01G544100.2	Wheat	cytosol, nucleus, peroxisome	81.34	62.77
Solyc03g117940.2.1	Tomato	nucleus	63.03	62.59
VIT_01s0150g00590.t01	Wine grape	cytosol	62.32	61.67
CDY22621	Canola	cytosol	62.32	61.25
KRG90206	Soybean	nucleus	60.56	59.93
KRH33434	Soybean	cytosol	60.56	59.93
Bra031683.1-P	Field mustard	cytosol	61.97	57.52
CDY06372	Canola	cytosol	62.32	57.28
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	78.87	31.15

Protein Annotations

MapMan:16.4.1.2.1	Gene3D:3.80.10.10	EMBL:AK355619	EMBL:AK368609	UniProt:F2CVG7	GO:GO:0000398
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005730
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987	GO:GO:0015030
EnsemblPlantsGene:HORVU5Hr1G122640	EnsemblPlants:HORVU5Hr1G122640.6	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF14580	PANTHER:PTHR10552
PANTHER:PTHR10552:SF6	SUPFAM:SSF52058	UniParc:UPI00020049C1	SEG:seg	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CVG7]

Coordinates

chrchr5H:+:662606085..662611272

Molecular Weight (calculated)

31693.9 Da

IEP (calculated)

5.013

GRAVY (calculated)

-0.435

Length

284 amino acids

Sequence
(BLAST)

001: MVRLNADLIW KSPHFFNAIK ERELDLRGNK IAIIENIGAT EDQFDTIDLS DNEIVKLENF PFMNRLGTLL INNNRITRIN PNLGEFLPKM HTLVLTNNRL
101: TSLAEIDPLA SLPKLQFLSL LDNTVTKQPD YRLYVIHKLK HLRLLDFKKV KQQERAEAAQ KFHSKEAEEA AKKVAAKAYI PVVMDAQGTT KDQGPKVVAP
201: TAAQITAIKA AIVNSQTLDE VTRLEKALST GQVPAEFALP KPDTNMAEAS EEAEAEKMET DGQGPEDGVV EQKQADESTP IQED

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.