Factsheet for Os02t0234800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 19621931
nucleus: 23303719
nucleus: 23777608
nucleus: 26035336

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93090	Sorghum	cytosol	88.73	89.05
TraesCS5D01G544000.1	Wheat	cytosol	86.27	85.96
TraesCS5B01G543700.1	Wheat	cytosol	86.27	85.96
TraesCS4A01G329300.1	Wheat	nucleus	86.27	85.96
HORVU5Hr1G122640.6	Barley	cytosol	84.86	84.86
AT1G09760.1	Thale cress	cytosol	64.44	73.49
GSMUA_Achr7P02600_001	Banana	cytosol	72.18	72.18
CDY20674	Canola	cytosol	64.44	71.48
Bra030797.1-P	Field mustard	cytosol	63.38	70.31
CDY31066	Canola	cytosol	63.38	70.31
CDX94952	Canola	cytosol	63.73	69.88
Bra019994.1-P	Field mustard	cytosol	63.73	69.35
CDX93483	Canola	cytosol	63.38	68.44
VIT_01s0150g00590.t01	Wine grape	cytosol	66.55	65.85
PGSC0003DMT400036729	Potato	cytosol	66.2	65.73
Solyc03g117940.2.1	Tomato	nucleus	65.85	65.38
KRG90206	Soybean	nucleus	65.49	64.81
KRH33434	Soybean	cytosol	64.08	63.41
CDY22621	Canola	cytosol	63.73	62.63
Bra031683.1-P	Field mustard	cytosol	63.38	58.82
CDY06372	Canola	cytosol	63.73	58.58
TraesCS5B01G544100.2	Wheat	cytosol, nucleus, peroxisome	75.0	57.88
TraesCS5B01G003200.2	Wheat	cytosol	51.41	35.52
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	85.92	33.94

Protein Annotations

MapMan:16.4.1.2.1	Gene3D:3.80.10.10	EntrezGene:4328823	EMBL:AK070679	ProteinID:BAD27667.1	ProteinID:BAF08297.1
ProteinID:BAS77812.1	ProteinID:EEE56623.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005730
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987	GO:GO:0015030
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	EnsemblPlantsGene:Os02g0234800	EnsemblPlants:Os02t0234800-01
PFAM:PF14580	PFscan:PS51450	PANTHER:PTHR10552	PANTHER:PTHR10552:SF6	UniProt:Q6EUK2	SUPFAM:SSF52058
UniParc:UPI00003CE49C	RefSeq:XP_015627328.1	SEG:seg	:	:	:

Description

Similar to U2 small nuclear ribonucleoprotein A' (U2 snRNP-A'). (Os02t0234800-01)

Coordinates

chr2:-:7630948..7635189

Molecular Weight (calculated)

32001.0 Da

IEP (calculated)

4.785

GRAVY (calculated)

-0.574

Length

284 amino acids

Sequence
(BLAST)

001: MVRLTADLIW KSPHFFNAVK DRELDIRGNK IPIIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL VNNNRITRIN PNLGEFLPKL HTLVLTNNRL
101: TNLAEIDPLA SLPKLQFLSL LDNTVTKQPD YRLYVIHKLK HLRLLDFKKV KQQERIAAAQ KFHSKEAEEE AKKVPAKTFT PGQVVDAQDT TMEEQGPKVV
201: APTPEQITAI KAAIVNSQTL EEVARLEKAL STGQIPAEFA IPKPDANMAD ASEETEKMET DGQNQENGAD EKKQNEESTP IEED

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.