CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY02052
CDY10721

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09760.1	CDY02052	AT2G30260.1	21798944
AT1G09760.1	CDY10721	AT2G30260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31066	Canola	cytosol	83.05	93.75
CDY20674	Canola	cytosol	82.7	93.36
CDX94952	Canola	cytosol	80.62	89.96
AT1G09760.1	Thale cress	cytosol	77.16	89.56
CDX93483	Canola	cytosol	81.31	89.35
CDY06372	Canola	cytosol	90.31	84.47
GSMUA_Achr7P02600_001	Banana	cytosol	65.4	66.55
KRH33434	Soybean	cytosol	65.74	66.2
KRG90206	Soybean	nucleus	65.74	66.2
PGSC0003DMT400036729	Potato	cytosol	64.36	65.03
Solyc03g117940.2.1	Tomato	nucleus	64.36	65.03
EER93090	Sorghum	cytosol	62.98	64.31
Os02t0234800-01	Rice	nucleus	62.63	63.73
VIT_01s0150g00590.t01	Wine grape	cytosol	62.63	63.07
HORVU5Hr1G122640.6	Barley	cytosol	61.25	62.32
TraesCS5B01G543700.1	Wheat	cytosol	60.9	61.75
TraesCS5D01G544000.1	Wheat	cytosol	60.9	61.75
TraesCS4A01G329300.1	Wheat	nucleus	60.55	61.4
TraesCS5B01G544100.2	Wheat	cytosol, nucleus, peroxisome	52.25	41.03
TraesCS5B01G003200.2	Wheat	cytosol	40.48	28.47
Zm00001d034858_P002	Maize	cytosol, nucleus, plastid	64.01	25.73

Protein Annotations

EnsemblPlants:CDY22621	EnsemblPlantsGene:GSBRNA2T00019290001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:U2A'_phosphoprotein32A_C	PANTHER:PTHR10552
PANTHER:PTHR10552:SF6	PFAM:PF14580	PFscan:PS51450	ProteinID:CDY22621	ProteinID:CDY22621.1	SEG:seg
SMART:SM00446	SUPFAM:SSF52058	UniParc:UPI0004EE9160	UniProt:A0A078GB88	MapMan:16.4.1.2.1	:

Description

BnaC08g42550DBnaC08g42550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GB88]

Coordinates

chrLK032134:+:148414..150522

Molecular Weight (calculated)

32230.1 Da

IEP (calculated)

5.739

GRAVY (calculated)

-0.066

Length

289 amino acids

Sequence
(BLAST)

001: MVKLTADLIW NSPHFFNAIK ERELELRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PLLNRLGTLI INNNRITRIN PNIGEFLPKL HTLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKPN YRLYVIHKLK SLRVLDFIKV KAKERAEAAA LFSSKEAEEE VKKVSQQEVQ KVSDTTEEPE TPKVVAPTQE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIVPDPA SGVNDGSGPM EDLSRTLWSL VIFVVAGIEN VAVALLQSLH GHARFLSLP

Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)

001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE

Arabidopsis Description

U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.