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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400078262

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G09760.1 PGSC0003DMT400078262 AT2G30260.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g117940.2.1 Tomato nucleus 98.6 98.6
AT1G09760.1 Thale cress cytosol 65.73 75.5
CDY20674 Canola cytosol 66.08 73.83
Bra030797.1-P Field mustard cytosol 65.03 72.66
CDY31066 Canola cytosol 65.03 72.66
CDX94952 Canola cytosol 65.38 72.2
CDX93483 Canola cytosol 66.08 71.86
GSMUA_Achr7P02600_001 Banana cytosol 70.98 71.48
VIT_01s0150g00590.t01 Wine grape cytosol 71.68 71.43
Bra019994.1-P Field mustard cytosol 64.69 70.88
KRG90206 Soybean nucleus 69.58 69.34
KRH33434 Soybean cytosol 68.53 68.29
Os02t0234800-01 Rice nucleus 65.73 66.2
EER93090 Sorghum cytosol 65.38 66.08
CDY22621 Canola cytosol 65.03 64.36
TraesCS4A01G329300.1 Wheat nucleus 63.29 63.51
HORVU5Hr1G122640.6 Barley cytosol 62.94 63.38
TraesCS5B01G543700.1 Wheat cytosol 62.94 63.16
TraesCS5D01G544000.1 Wheat cytosol 62.94 63.16
Bra031683.1-P Field mustard cytosol 66.08 61.76
CDY06372 Canola cytosol 66.43 61.49
TraesCS5B01G544100.2 Wheat cytosol, nucleus, peroxisome 53.5 41.58
TraesCS5B01G003200.2 Wheat cytosol 43.36 30.17
Zm00001d034858_P002 Maize cytosol, nucleus, plastid 63.64 25.31
Protein Annotations
MapMan:16.4.1.2.1Gene3D:3.80.10.10ProteinID:ABA81870ProteinID:ABA81870.1EMBL:DQ207862GO:GO:0000398
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005730
GO:GO:0005737GO:GO:0005829GO:GO:0006139GO:GO:0006950GO:GO:0008150GO:GO:0008152
GO:GO:0009409GO:GO:0009507GO:GO:0009536GO:GO:0009628GO:GO:0009987GO:GO:0015030
InterPro:IPR032675InterPro:LRR_dom_sfUniProt:M1B451PFAM:PF14580EnsemblPlantsGene:PGSC0003DMG400014166PGSC:PGSC0003DMG400014166
EnsemblPlants:PGSC0003DMT400036729PANTHER:PTHR10552PANTHER:PTHR10552:SF6SUPFAM:SSF52058UniParc:UPI0002960E63SEG:seg
Description
U2 small nuclear ribonucleoprotein A [Source:PGSC_GENE;Acc:PGSC0003DMG400014166]
Coordinates
chr3:+:57510106..57518777
Molecular Weight (calculated)
32401.9 Da
IEP (calculated)
5.186
GRAVY (calculated)
-0.551
Length
286 amino acids
Sequence
(BLAST)
001: MVRLTADLIW KSPHFFNAIR ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL MNNNRITRIN PNIGEFLPKL HTLIITSNRL
101: TNLVEIDPLA SLPKLKFLSL LENNITKRPN YRLYVIHKLK SLRLLDFRKV KQKERLEASK LFASQEAEEQ VKKESVKTVP VEVAVPAEEP KEAQASKPVA
201: PTPEQIIAIK AAIVNSQTLE EVARLEQALK SGQLPADLNI GDHDVTAKKE DAKEDKMVTD SDDKANKTEE NVPEQKPDGP TDMEQE
Best Arabidopsis Sequence Match ( AT1G09760.1 )
(BLAST)
001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE
Arabidopsis Description
U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.