Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400078262 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G09760.1 | PGSC0003DMT400078262 | AT2G30260.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc03g117940.2.1 | Tomato | nucleus | 98.6 | 98.6 |
AT1G09760.1 | Thale cress | cytosol | 65.73 | 75.5 |
CDY20674 | Canola | cytosol | 66.08 | 73.83 |
Bra030797.1-P | Field mustard | cytosol | 65.03 | 72.66 |
CDY31066 | Canola | cytosol | 65.03 | 72.66 |
CDX94952 | Canola | cytosol | 65.38 | 72.2 |
CDX93483 | Canola | cytosol | 66.08 | 71.86 |
GSMUA_Achr7P02600_001 | Banana | cytosol | 70.98 | 71.48 |
VIT_01s0150g00590.t01 | Wine grape | cytosol | 71.68 | 71.43 |
Bra019994.1-P | Field mustard | cytosol | 64.69 | 70.88 |
KRG90206 | Soybean | nucleus | 69.58 | 69.34 |
KRH33434 | Soybean | cytosol | 68.53 | 68.29 |
Os02t0234800-01 | Rice | nucleus | 65.73 | 66.2 |
EER93090 | Sorghum | cytosol | 65.38 | 66.08 |
CDY22621 | Canola | cytosol | 65.03 | 64.36 |
TraesCS4A01G329300.1 | Wheat | nucleus | 63.29 | 63.51 |
HORVU5Hr1G122640.6 | Barley | cytosol | 62.94 | 63.38 |
TraesCS5B01G543700.1 | Wheat | cytosol | 62.94 | 63.16 |
TraesCS5D01G544000.1 | Wheat | cytosol | 62.94 | 63.16 |
Bra031683.1-P | Field mustard | cytosol | 66.08 | 61.76 |
CDY06372 | Canola | cytosol | 66.43 | 61.49 |
TraesCS5B01G544100.2 | Wheat | cytosol, nucleus, peroxisome | 53.5 | 41.58 |
TraesCS5B01G003200.2 | Wheat | cytosol | 43.36 | 30.17 |
Zm00001d034858_P002 | Maize | cytosol, nucleus, plastid | 63.64 | 25.31 |
Protein Annotations
MapMan:16.4.1.2.1 | Gene3D:3.80.10.10 | ProteinID:ABA81870 | ProteinID:ABA81870.1 | EMBL:DQ207862 | GO:GO:0000398 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005730 |
GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009409 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0015030 |
InterPro:IPR032675 | InterPro:LRR_dom_sf | UniProt:M1B451 | PFAM:PF14580 | EnsemblPlantsGene:PGSC0003DMG400014166 | PGSC:PGSC0003DMG400014166 |
EnsemblPlants:PGSC0003DMT400036729 | PANTHER:PTHR10552 | PANTHER:PTHR10552:SF6 | SUPFAM:SSF52058 | UniParc:UPI0002960E63 | SEG:seg |
Description
U2 small nuclear ribonucleoprotein A [Source:PGSC_GENE;Acc:PGSC0003DMG400014166]
Coordinates
chr3:+:57510106..57518777
Molecular Weight (calculated)
32401.9 Da
IEP (calculated)
5.186
GRAVY (calculated)
-0.551
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRLTADLIW KSPHFFNAIR ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL MNNNRITRIN PNIGEFLPKL HTLIITSNRL
101: TNLVEIDPLA SLPKLKFLSL LENNITKRPN YRLYVIHKLK SLRLLDFRKV KQKERLEASK LFASQEAEEQ VKKESVKTVP VEVAVPAEEP KEAQASKPVA
201: PTPEQIIAIK AAIVNSQTLE EVARLEQALK SGQLPADLNI GDHDVTAKKE DAKEDKMVTD SDDKANKTEE NVPEQKPDGP TDMEQE
101: TNLVEIDPLA SLPKLKFLSL LENNITKRPN YRLYVIHKLK SLRLLDFRKV KQKERLEASK LFASQEAEEQ VKKESVKTVP VEVAVPAEEP KEAQASKPVA
201: PTPEQIIAIK AAIVNSQTLE EVARLEQALK SGQLPADLNI GDHDVTAKKE DAKEDKMVTD SDDKANKTEE NVPEQKPDGP TDMEQE
001: MVKLTADLIW KSPHFFNAIK ERELDLRGNK IPVIENLGAT EDQFDTIDLS DNEIVKLENF PYLNRLGTLL INNNRITRIN PNLGEFLPKL HSLVLTNNRL
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE
101: VNLVEIDPLA SIPKLQYLSL LDNNITKKAN YRLYVIHKLK SLRVLDFIKI KAKERAEAAS LFSSKEAEEE VKKVSREEVK KVSETAENPE TPKVVAPTAE
201: QILAIKAAII NSQTIEEIAR LEQALKFGQV PAGLIIPDPA TNDSAPMEE
Arabidopsis Description
U2A'U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:P43333]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.