CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH33288
KRH71626
KRH76336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30260.1	KRH33288	AT1G49590.1	23524848
AT2G30260.1	KRH71626	AT1G49590.1	23524848
AT2G30260.1	KRH76336	AT1G49590.1	23524848

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72767	Soybean	nucleus	97.41	97.41
VIT_06s0004g07530.t01	Wine grape	nucleus	81.03	80.34
PGSC0003DMT400078262	Potato	nucleus	75.86	75.86
Solyc06g082360.2.1	Tomato	nucleus	75.0	74.68
AT1G06960.1	Thale cress	nucleus	72.41	73.36
GSMUA_Achr3P09930_001	Banana	nucleus	74.14	73.19
AT2G30260.1	Thale cress	nucleus	71.12	71.12
CDY10721	Canola	nucleus	69.83	71.05
CDY02052	Canola	nucleus	69.4	70.61
GSMUA_Achr10P...	Banana	nucleus	71.98	70.46
Bra018324.1-P	Field mustard	nucleus	68.97	70.18
EER92401	Sorghum	nucleus	68.1	67.81
Zm00001d047699_P001	Maize	extracellular, nucleus	67.67	67.38
Zm00001d028804_P001	Maize	nucleus	67.67	67.38
HORVU4Hr1G055040.1	Barley	nucleus	65.09	64.81
TraesCS4B01G188900.1	Wheat	nucleus	64.22	63.95
TraesCS4D01G190200.1	Wheat	nucleus	64.22	63.95
TraesCS4A01G115300.1	Wheat	nucleus	63.79	63.52
KRG97081	Soybean	nucleus	57.76	55.6
KRH68830	Soybean	nucleus	56.47	54.36

Protein Annotations

EntrezGene:100805822	MapMan:16.4.1.2.2	Gene3D:3.30.70.330	EMBL:ACUP02009047	EMBL:BT099184	UniProt:C6TN69
ncoils:Coil	EnsemblPlantsGene:GLYMA_14G200400	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005686
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0035614	InterPro:IPR000504
InterPro:IPR012677	EnsemblPlants:KRH17128	ProteinID:KRH17128	ProteinID:KRH17128.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR10501	PANTHER:PTHR10501:SF32	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0001B1734B	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:46540858..46544079

Molecular Weight (calculated)

26212.5 Da

IEP (calculated)

9.647

GRAVY (calculated)

-0.594

Length

232 amino acids

Sequence
(BLAST)

001: MLSGDIPPNQ TIYIKNINEK VKKDELKRSL YCLFSQYGRI LDVIALKTPK LRGQAWVCFS EVTAASNAVR QMQNFPFYDK PMRIQYAKTK SDCIAKEEGT
101: YVPREKKKKQ EEKAERKRRA EEAQQSGVAN GTHSASNGGP TASFRQGPGA QETAAPNNIL FIENLPHETT GRMLEMLFEQ YPGFKEVRLI EAKPGIAFVD
201: FEDEVQSSMA MQALHGFKIT PQNPMIITFA KK

Best Arabidopsis Sequence Match ( AT2G30260.1 )
(BLAST)

001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK

Arabidopsis Description

U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.