Factsheet for AT1G06960.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G30260.1	Thale cress	nucleus	79.91	78.88
VIT_06s0004g07530.t01	Wine grape	nucleus	74.67	73.08
KRH17128	Soybean	nucleus	73.36	72.41
KRH72767	Soybean	nucleus	72.49	71.55
PGSC0003DMT400078262	Potato	nucleus	72.49	71.55
Solyc06g082360.2.1	Tomato	nucleus	71.62	70.39
GSMUA_Achr3P09930_001	Banana	nucleus	70.31	68.51
GSMUA_Achr10P...	Banana	nucleus	68.56	66.24
Zm00001d047699_P001	Maize	extracellular, nucleus	65.07	63.95
EER92401	Sorghum	nucleus	64.63	63.52
Zm00001d028804_P001	Maize	nucleus	63.32	62.23
HORVU4Hr1G055040.1	Barley	nucleus	62.88	61.8
TraesCS4B01G188900.1	Wheat	nucleus	62.45	61.37
TraesCS4D01G190200.1	Wheat	nucleus	62.45	61.37
TraesCS4A01G115300.1	Wheat	nucleus	62.01	60.94
AT2G47580.1	Thale cress	nucleus	54.59	50.0

Protein Annotations

MapMan:16.4.1.2.2	Gene3D:3.30.70.330	EntrezGene:837206	UniProt:A0A178WJB3	ProteinID:AAF82223.1	ProteinID:AEE28058.1
ProteinID:AEE28060.1	ArrayExpress:AT1G06960	EnsemblPlantsGene:AT1G06960	RefSeq:AT1G06960	TAIR:AT1G06960	RefSeq:AT1G06960-TAIR-G
EnsemblPlants:AT1G06960.1	TAIR:AT1G06960.1	EMBL:AY080742	EMBL:AY142487	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005681	GO:GO:0005686	GO:GO:0005737	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0015030
GO:GO:0030529	GO:GO:0035614	InterPro:IPR000504	InterPro:IPR012677	RefSeq:NP_001077472.1	RefSeq:NP_850936.1
InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:OAP18427.1	PFAM:PF00076	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PFscan:PS50102	PANTHER:PTHR10501	PANTHER:PTHR10501:SF32	UniProt:Q8H1S6	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00000ADA32	SEG:seg	:	:

Description

U2 small nuclear ribonucleoprotein B'' 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1S6]

Coordinates

chr1:+:2135818..2137838

Molecular Weight (calculated)

26224.9 Da

IEP (calculated)

9.769

GRAVY (calculated)

-0.515

Length

229 amino acids

Sequence
(BLAST)

001: MLTADIPPNQ SIYIKHINEK IKKEELKRSL YCLFSQFGRL LDVVALKTPK LRGQAWVVFT EVTAASNAVR QMQNFPFYDK PMRIQYAKSK SDYVTKAEGS
101: FVPKEKKMKQ EEKVERKRHA EETQQPSMPN GATTQNGMPV PPFQPSGQDT MPPNNILFIH NLPIETNSMM LQLLFEQYPG FKEIRMIEAK PGIAFVEYED
201: DVQSSMAMQA LQGFKITPQN PMVVSFAKK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.