Factsheet for VIT_06s0004g07530.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g00890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30260.1	VIT_03s0063g00890.t01	AT1G49590.1	23524848

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P09930_001	Banana	nucleus	81.62	81.28
KRH17128	Soybean	nucleus	80.34	81.03
KRH72767	Soybean	nucleus	79.91	80.6
GSMUA_Achr10P...	Banana	nucleus	80.34	79.32
PGSC0003DMT400078262	Potato	nucleus	78.63	79.31
Solyc06g082360.2.1	Tomato	nucleus	77.35	77.68
AT1G06960.1	Thale cress	nucleus	73.08	74.67
EER92401	Sorghum	nucleus	73.08	73.39
Zm00001d047699_P001	Maize	extracellular, nucleus	72.65	72.96
Zm00001d028804_P001	Maize	nucleus	72.22	72.53
AT2G30260.1	Thale cress	nucleus	71.79	72.41
CDY10721	Canola	nucleus	69.66	71.49
HORVU4Hr1G055040.1	Barley	nucleus	70.94	71.24
TraesCS4B01G188900.1	Wheat	nucleus	70.51	70.82
TraesCS4D01G190200.1	Wheat	nucleus	70.51	70.82
CDY02052	Canola	nucleus	68.8	70.61
Bra018324.1-P	Field mustard	nucleus	68.8	70.61
TraesCS4A01G115300.1	Wheat	nucleus	70.09	70.39
VIT_07s0005g00650.t01	Wine grape	nucleus	55.98	56.47

Protein Annotations

EntrezGene:100248478	wikigene:100248478	MapMan:16.4.1.2.2	Gene3D:3.30.70.330	ProteinID:CBI15863	ProteinID:CBI15863.3
ncoils:Coil	UniProt:D7SJN7	EMBL:FN594951	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005686	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0035614
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100248478	wikigene:LOC100248478	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR10501	PANTHER:PTHR10501:SF32	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGR:TC51873	UniParc:UPI00015C7449	ArrayExpress:VIT_06s0004g07530	EnsemblPlantsGene:VIT_06s0004g07530	EnsemblPlants:VIT_06s0004g07530.t01
unigene:Vvi.7167	RefSeq:XP_002271864	RefSeq:XP_002271864.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:8305612..8309321

Molecular Weight (calculated)

26438.8 Da

IEP (calculated)

10.088

GRAVY (calculated)

-0.667

Length

234 amino acids

Sequence
(BLAST)

001: MLSGDIPPNQ SIYIKNLNEK VKKEELKRSL YCLFSQYGRI LDVVALKTPK LRGQAWVVFS EVTAASNAVR QMQNFPFYDK PMRVQYAKTK SDCVAKADGT
101: FVPREKKKKQ EEKAEKKRRA EEAQQSGNAN GRNAETNGGP TPPFRQGNQG AREPEAAPNN ILFIQNLPHQ TTSMMLQVLF QQYPGFREVR MIEAKPGIAF
201: VEFEDDVQSS MAMEALQGFK ITPQNPMAIA YAKK

Best Arabidopsis Sequence Match ( AT2G30260.1 )
(BLAST)

001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK

Arabidopsis Description

U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.