Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33288 | Soybean | nucleus | 95.53 | 95.14 |
| KRH76336 | Soybean | nucleus | 95.53 | 95.14 |
| VIT_03s0063g00890.t01 | Wine grape | nucleus | 63.82 | 61.09 |
| GSMUA_Achr10P... | Banana | nucleus | 47.56 | 60.94 |
| Os06t0215200-01 | Rice | nucleus | 58.13 | 58.85 |
| AT1G49590.1 | Thale cress | nucleus | 56.5 | 57.44 |
| EER89414 | Sorghum | nucleus | 56.91 | 57.38 |
| TraesCS7D01G174600.1 | Wheat | nucleus | 56.5 | 56.97 |
| TraesCS7B01G078500.1 | Wheat | nucleus | 55.69 | 56.15 |
| TraesCS7A01G173200.1 | Wheat | nucleus | 55.69 | 56.15 |
| CDY28102 | Canola | nucleus | 54.06 | 54.29 |
| CDY50960 | Canola | nucleus | 54.06 | 54.29 |
| Bra018814.1-P | Field mustard | nucleus | 54.06 | 54.06 |
| PGSC0003DMT400066376 | Potato | nucleus | 57.32 | 53.82 |
| Zm00001d044917_P001 | Maize | nucleus | 53.66 | 53.66 |
| Solyc01g108430.2.1 | Tomato | nucleus | 56.91 | 53.44 |
| HORVU7Hr1G035910.4 | Barley | nucleus | 56.1 | 52.27 |
Protein Annotations
| EntrezGene:100779677 | Gene3D:3.30.160.60 | MapMan:35.1 | EMBL:ACUP02000919 | ncoils:Coil | EnsemblPlantsGene:GLYMA_02G159500 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0008270 | GO:GO:0046872 | UniProt:I1JFM5 | InterPro:IPR000690 | EnsemblPlants:KRH71626 |
| ProteinID:KRH71626 | ProteinID:KRH71626.1 | InterPro:Matrin/U1-C_Znf_C2H2 | InterPro:Matrin/U1-like-C_Znf_C2H2 | PFAM:PF06220 | PFscan:PS50171 |
| PANTHER:PTHR13173 | PANTHER:PTHR13173:SF10 | SMART:SM00451 | SUPFAM:SSF57667 | InterPro:U1-CZ_Znf_C2H2 | UniParc:UPI0002336F2C |
| InterPro:Znf_C2H2_sf | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:17747239..17756082
Molecular Weight (calculated)
28274.8 Da
IEP (calculated)
10.072
GRAVY (calculated)
-1.256
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEYWVSQGN KWCDFCKIYI SNNPGSIRNH ELGQRHKDNV SKRLAAMRKD NIAKEKEQKE TARAIEQIEA KAQRSYQKDK AKFEETRESH ELDDQEWEFD
101: SSSGYYYHKT NGFYYDQKSG FYYSDTMGKW VTQEEAYASP HFTSNARHNG PTVKKSLSTS QSKSDGNQAN KFNNRSSPGP VVTTLNPKRN VKAAPSSLAV
201: GKRKRPGEKS KVISDEEKAA LKAREAARKR VQEREKPLLG LYNKPY
101: SSSGYYYHKT NGFYYDQKSG FYYSDTMGKW VTQEEAYASP HFTSNARHNG PTVKKSLSTS QSKSDGNQAN KFNNRSSPGP VVTTLNPKRN VKAAPSSLAV
201: GKRKRPGEKS KVISDEEKAA LKAREAARKR VQEREKPLLG LYNKPY
001: MTEYWVSQGN KWCEFCKIWI QNNPTSIRNH DLGKRHRECV DKKLTDMRER SAAKDKELKK NEKLLQQIEA KATRSYQKDI ATAQQVAKAN GAPEDGTSDW
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
Arabidopsis Description
ZOP1Zinc finger protein ZOP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.