CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 5
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03029	Soybean	nucleus	96.93	97.98
VIT_11s0037g00510.t01	Wine grape	cytosol	90.49	89.94
KRH24810	Soybean	nucleus	87.73	88.14
KRH29811	Soybean	nucleus	87.42	87.83
PGSC0003DMT400029104	Potato	cytosol	82.06	87.13
KRG95806	Soybean	nucleus	87.12	86.85
KRH01631	Soybean	endoplasmic reticulum	86.35	86.75
KRH67530	Soybean	endoplasmic reticulum, nucleus	86.81	86.68
KRH70484	Soybean	cytosol	74.39	86.61
CDX83960	Canola	cytosol	86.2	86.46
AT1G16030.1	Thale cress	cytosol	85.43	86.22
KRH19702	Soybean	endoplasmic reticulum	83.44	86.08
CDX96825	Canola	cytosol	85.74	86.0
Solyc07g005820.2.1	Tomato	cytosol	86.2	85.93
Bra016644.1-P	Field mustard	cytosol	85.58	85.85
Bra026084.1-P	Field mustard	cytosol	84.97	85.63
CDY33359	Canola	cytosol	67.64	85.14
CDY35063	Canola	cytosol	67.48	84.94
GSMUA_Achr5P04580_001	Banana	endoplasmic reticulum	62.73	75.6
KRH11083	Soybean	cytosol, endoplasmic reticulum	60.89	67.52
KRH11084	Soybean	endoplasmic reticulum	65.95	67.08
KRH49659	Soybean	endoplasmic reticulum	62.12	63.98
KRH01651	Soybean	cytosol	58.59	63.46
KRH01609	Soybean	cytosol	65.34	63.3
KRH01610	Soybean	cytosol, endoplasmic reticulum	63.5	61.52
KRH60086	Soybean	endoplasmic reticulum	62.88	61.38
KRH41370	Soybean	endoplasmic reticulum	62.73	61.32
KRH60091	Soybean	nucleus	63.19	58.77
KRH41372	Soybean	endoplasmic reticulum	62.73	57.77
KRH21163	Soybean	endoplasmic reticulum	40.64	54.19
KRH21710	Soybean	endoplasmic reticulum	47.7	46.14
KRH10640	Soybean	nucleus	47.39	45.85
KRH70355	Soybean	cytosol	62.58	45.74
KRH42039	Soybean	mitochondrion	47.39	45.64
KRH49859	Soybean	endoplasmic reticulum, nucleus	47.24	45.49
KRH26302	Soybean	plastid	19.17	45.29
KRH06058	Soybean	mitochondrion	46.32	43.83
KRH26303	Soybean	cytosol, endoplasmic reticulum	17.48	42.7

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:100790356	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40
Gene3D:3.90.640.10	EMBL:ACUP02001201	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G205600	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam
UniProt:I1JGR5	InterPro:IPR029047	InterPro:IPR029048	EnsemblPlants:KRH72327	ProteinID:KRH72327	ProteinID:KRH72327.1
PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375
PANTHER:PTHR19375:SF316	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	UniParc:UPI000233755D	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:39063784..39066052

Molecular Weight (calculated)

71630.2 Da

IEP (calculated)

4.938

GRAVY (calculated)

-0.439

Length

652 amino acids

Sequence
(BLAST)

001: MATKEGKAIG IDLGTTYSCV GVWQNDRVEI IPNDQGNRTT PSYVAFTDTE RLIGDAAKNQ VAMNPQNTVF DAKRLIGRRF SDSPVQNDMK LWPFKVVAGP
101: GDKPMIVVNY KGEEKKFSAE EISSMVLVKM REVAEAFLGH AVKNAVITVP AYFNDSQRQA TKDAGAISGL NVLRIINEPT AAAIAYGLDK KASRKGEQNV
201: LIFDLGGGTF DVSILTIEEG IFEVKATAGD THLGGEDFDN RMVNHFVSEF RRKNKKDISG NARALRRLRT ACERAKRTLS STAQTTIEID SLYEGIDFYA
301: TITRARFEEM NMDLFRKCME PVEKCLRDAK IDKSHVHEVV LVGGSTRIPK VQQLLQDFFN GKELCKSINP DEAVAYGASV QAAILSGEGD EKVQDLLLLD
401: VTPLSLGLET AGGVMTVLIP RNTTIPTKKE QIFSTYSDNQ PGVLIQVFEG ERARTKDNNL LGKFELTGIP PAPRGVPQIN VCFDIDANGI LNVSAEDKTA
501: GVKNKITITN DKGRLSKEEI EKMLKDAERY KAEDEEVKKK VEAKNSLENY AYNMRNTIKD EKIGEKLSPD EKEKIEKAVE DAIQWLEGNQ LAEVDEFEDK
601: QKELEGICNP IIAKMYQGAA ARPGGDVPTG DDDMPGAGGA GSGAGPKIEE VD

Best Arabidopsis Sequence Match ( AT1G16030.1 )
(BLAST)

001: MATKSEKAIG IDLGTTYSCV GVWMNDRVEI IPNDQGNRTT PSYVAFTDTE RLIGDAAKNQ VALNPQNTVF DAKRLIGRKF SDPSVQSDIL HWPFKVVSGP
101: GEKPMIVVSY KNEEKQFSPE EISSMVLVKM KEVAEAFLGR TVKNAVVTVP AYFNDSQRQA TKDAGAISGL NVLRIINEPT AAAIAYGLDK KGTKAGEKNV
201: LIFDLGGGTF DVSLLTIEEG VFEVKATAGD THLGGEDFDN RLVNHFVAEF RRKHKKDIAG NARALRRLRT ACERAKRTLS STAQTTIEID SLHEGIDFYA
301: TISRARFEEM NMDLFRKCMD PVEKVLKDAK LDKSSVHDVV LVGGSTRIPK IQQLLQDFFN GKELCKSINP DEAVAYGAAV QAAILTGEGS EKVQDLLLLD
401: VAPLSLGLET AGGVMTVLIP RNTTVPCKKE QVFSTYADNQ PGVLIQVYEG ERARTRDNNL LGTFELKGIP PAPRGVPQIN VCFDIDANGI LNVSAEDKTA
501: GVKNQITITN DKGRLSKEEI EKMVQDAEKY KAEDEQVKKK VEAKNSLENY AYNMRNTIKD EKLAQKLTQE DKQKIEKAID ETIEWIEGNQ LAEVDEFEYK
601: LKELEGICNP IISKMYQGGA AAGGMPTDGD FSSSGAAGGP KIEEVD

Arabidopsis Description

HSP70-5Hsp70b [Source:UniProtKB/TrEMBL;Acc:A0A178W9N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.