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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 4
  • plastid 1
  • mitochondrion 2
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum, mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 19658398
nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 24385303
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 24385303 doi
S Komatsu, S Hiraga, MZ Nouri
National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.
msms PMID: 19658398 doi
S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH24810 Soybean nucleus 98.61 98.61
KRH01631 Soybean endoplasmic reticulum 94.76 94.76
KRH70484 Soybean cytosol 81.66 94.64
KRH19702 Soybean endoplasmic reticulum 92.14 94.62
GSMUA_Achr8P20830_001 Banana cytosol, plasma membrane 94.3 94.44
GSMUA_Achr10P... Banana cytosol 70.11 94.4
VIT_08s0007g00130.t01 Wine grape cytosol 94.3 94.3
Solyc04g011440.2.1 Tomato cytosol, extracellular, nucleus, plastid, unclear 94.45 94.16
VIT_06s0004g04470.t01 Wine grape cytosol 94.3 93.86
PGSC0003DMT400071337 Potato cytosol 93.84 93.84
KRH67530 Soybean endoplasmic reticulum, nucleus 93.99 93.42
KRG95806 Soybean nucleus 93.53 92.81
Zm00001d047799_P002 Maize cytosol, extracellular, plasma membrane, plastid 91.53 91.1
Os03t0277300-01 Rice plastid 91.37 90.81
HORVU4Hr1G059260.1 Barley cytosol 91.68 90.56
EER92466 Sorghum cytosol 90.91 90.49
TraesCS4D01G206600.1 Wheat cytosol 91.53 90.41
TraesCS4B01G205700.1 Wheat cytosol, golgi 91.37 90.26
TraesCS4A01G098600.1 Wheat cytosol 91.68 88.94
KRH03029 Soybean nucleus 88.29 88.84
KRH72327 Soybean endoplasmic reticulum 87.83 87.42
GSMUA_Achr9P03960_001 Banana cytosol 67.03 85.13
KRH49659 Soybean endoplasmic reticulum 64.1 65.72
KRH01651 Soybean cytosol 60.86 65.61
KRH11084 Soybean endoplasmic reticulum 64.71 65.52
KRH11083 Soybean cytosol, endoplasmic reticulum 58.86 64.97
KRH01609 Soybean cytosol 66.56 64.19
KRH01610 Soybean cytosol, endoplasmic reticulum 66.41 64.04
KRH60086 Soybean endoplasmic reticulum 64.41 62.57
KRH41370 Soybean endoplasmic reticulum 64.25 62.52
KRH60091 Soybean nucleus 64.56 59.77
KRH41372 Soybean endoplasmic reticulum 64.1 58.76
KRH21163 Soybean endoplasmic reticulum 39.75 52.76
KRH70355 Soybean cytosol 65.02 47.31
KRH21710 Soybean endoplasmic reticulum 48.84 47.03
KRH10640 Soybean nucleus 48.69 46.88
KRH42039 Soybean mitochondrion 48.23 46.23
KRH49859 Soybean endoplasmic reticulum, nucleus 48.07 46.09
KRH26303 Soybean cytosol, endoplasmic reticulum 18.49 44.94
KRH26302 Soybean plastid 18.95 44.57
KRH06058 Soybean mitochondrion 47.3 44.56
Protein Annotations
Gene3D:1.20.1270.10EntrezGene:100812707MapMan:19.1.5.1Gene3D:2.60.34.10Gene3D:3.30.30.30Gene3D:3.30.420.40
Gene3D:3.90.640.10UniProt:A0A0R4J4D6EMBL:ACUP02006826ncoils:CoilEnsemblPlantsGene:GLYMA_11G140500GO:GO:0000166
GO:GO:0003674GO:GO:0005488GO:GO:0005524InterPro:HSP70_C_sfInterPro:HSP70_peptide-bd_sfInterPro:Heat_shock_70_CS
InterPro:Hsp_70_famInterPro:IPR029047InterPro:IPR029048EnsemblPlants:KRH29811ProteinID:KRH29811ProteinID:KRH29811.1
PFAM:PF00012PRINTS:PR00301ScanProsite:PS00297ScanProsite:PS00329ScanProsite:PS01036PANTHER:PTHR19375
PANTHER:PTHR19375:SF323SUPFAM:SSF100920SUPFAM:SSF100934SUPFAM:SSF53067UniParc:UPI000189D277SEG:seg
Description
hypothetical protein
Coordinates
chr11:-:10727496..10730447
Molecular Weight (calculated)
71085.4 Da
IEP (calculated)
4.840
GRAVY (calculated)
-0.439
Length
649 amino acids
Sequence
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDT ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR FSDASVQGDM KLWPFKVIPG
101: PAEKPMIVVN YKGEEKQFSA EEISSMVLMK MKEIAEAYLG STIKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKATSSGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNARALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSTGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIK DDKIASKLSS DDKKKIEDAI EQAIQWLDGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGDAGGAMDE DGPAAGSGSG AGPKIEEVD
Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
Arabidopsis Description
MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.