Factsheet for VIT_08s0007g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04510.t01	Wine grape	cytosol, extracellular	95.99	96.14
VIT_13s0019g01430.t01	Wine grape	cytosol	95.53	95.38
VIT_06s0004g04470.t01	Wine grape	cytosol	95.53	95.09
KRH24810	Soybean	nucleus	94.3	94.3
KRH29811	Soybean	nucleus	94.3	94.3
Zm00001d047799_P002	Maize	cytosol, extracellular, plasma membrane, plastid	90.45	90.03
HORVU4Hr1G059260.1	Barley	cytosol	90.91	89.8
TraesCS4B01G205700.1	Wheat	cytosol, golgi	90.91	89.8
TraesCS4D01G206600.1	Wheat	cytosol	90.91	89.8
EER92466	Sorghum	cytosol	89.98	89.57
Os03t0277300-01	Rice	plastid	89.98	89.43
TraesCS4A01G098600.1	Wheat	cytosol	90.6	87.89
GSMUA_Achr9P03960_001	Banana	cytosol	67.18	85.32
VIT_11s0037g00510.t01	Wine grape	cytosol	85.52	84.6
PGSC0003DMT400022442	Potato	cytosol	61.94	82.72
VIT_13s0019g00930.t01	Wine grape	cytosol	82.28	80.42
VIT_02s0025g02140.t01	Wine grape	endoplasmic reticulum	63.02	61.32
VIT_16s0098g01580.t01	Wine grape	endoplasmic reticulum	62.71	61.02
VIT_14s0060g02340.t01	Wine grape	endoplasmic reticulum	60.09	60.09
VIT_00s0415g00030.t01	Wine grape	mitochondrion	49.0	46.63
VIT_03s0097g00530.t01	Wine grape	mitochondrion	48.38	46.24
VIT_18s0041g01230.t01	Wine grape	plastid	47.92	45.07
VIT_17s0000g03310.t01	Wine grape	extracellular, plastid	47.92	43.99

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:100259551	wikigene:100259551	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30
Gene3D:3.30.420.40	Gene3D:3.90.640.10	ProteinID:CCB55602	ProteinID:CCB55602.1	ncoils:Coil	UniProt:F6HLD8
EMBL:FN595991	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	EntrezGene:LOC100259551
wikigene:LOC100259551	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036
PANTHER:PTHR19375	PANTHER:PTHR19375:SF308	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	TIGR:TC53154
TIGR:TC53559	TIGR:TC69094	UniParc:UPI00015C9EA7	ArrayExpress:VIT_08s0007g00130	EnsemblPlantsGene:VIT_08s0007g00130	EnsemblPlants:VIT_08s0007g00130.t01
unigene:Vvi.1624	RefSeq:XP_002263599	RefSeq:XP_002263599.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:14518534..14521575

Molecular Weight (calculated)

71069.6 Da

IEP (calculated)

4.912

GRAVY (calculated)

-0.407

Length

649 amino acids

Sequence
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDT ERLVGDAAKN QVAMNPINTV FDAKRLIGRR FSDATVQSDI KLWPFKVVAG
101: PGDKPMIVVN YKGEEKQFAA EEISSMVLMK MREIAEAYLG SAVKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKHKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGVDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NDKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTFSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEEHKK KVDAKNALEN YAYNMRNTVK DEKIGAKLPP ADKKKIEDAI EQAIQWLDNN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGPDMGGGMD EDGPSAGGSG AGPKIEEVD

Best Arabidopsis Sequence Match ( AT5G02500.1 )
(BLAST)

001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGEAGGPGAS GMDDDAPPAS GGAGPKIEEV D

Arabidopsis Description

MED37EProbable mediator of RNA polymerase II transcription subunit 37e [Source:UniProtKB/Swiss-Prot;Acc:P22953]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.