Factsheet for VIT_06s0004g04470.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g00130.t01	Wine grape	cytosol	95.09	95.53
VIT_06s0004g04510.t01	Wine grape	cytosol, extracellular	94.79	95.37
KRH24810	Soybean	nucleus	94.17	94.61
KRH29811	Soybean	nucleus	93.86	94.3
VIT_13s0019g01430.t01	Wine grape	cytosol	93.71	94.0
EER92466	Sorghum	cytosol	89.88	89.88
Zm00001d047799_P002	Maize	cytosol, extracellular, plasma membrane, plastid	89.88	89.88
Os03t0277300-01	Rice	plastid	89.88	89.74
HORVU4Hr1G059260.1	Barley	cytosol	90.03	89.35
TraesCS4B01G205700.1	Wheat	cytosol, golgi	89.88	89.19
TraesCS4D01G206600.1	Wheat	cytosol	89.72	89.04
TraesCS4A01G098600.1	Wheat	cytosol	89.57	87.29
GSMUA_Achr9P03960_001	Banana	cytosol	66.56	84.93
VIT_11s0037g00510.t01	Wine grape	cytosol	85.28	84.76
PGSC0003DMT400022442	Potato	cytosol	61.5	82.51
VIT_13s0019g00930.t01	Wine grape	cytosol	80.83	79.37
VIT_14s0060g02340.t01	Wine grape	endoplasmic reticulum	61.2	61.48
VIT_02s0025g02140.t01	Wine grape	endoplasmic reticulum	62.88	61.47
VIT_16s0098g01580.t01	Wine grape	endoplasmic reticulum	62.73	61.32
VIT_00s0415g00030.t01	Wine grape	mitochondrion	48.47	46.33
VIT_03s0097g00530.t01	Wine grape	mitochondrion	48.01	46.1
VIT_18s0041g01230.t01	Wine grape	plastid	46.78	44.2
VIT_17s0000g03310.t01	Wine grape	extracellular, plastid	47.24	43.56

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:100265651	wikigene:100265651	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30
Gene3D:3.30.420.40	Gene3D:3.90.640.10	ProteinID:CCB43585	ProteinID:CCB43585.1	ncoils:Coil	UniProt:F6GV26
EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	EntrezGene:LOC100265651
wikigene:LOC100265651	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036
PANTHER:PTHR19375	PANTHER:PTHR19375:SF308	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	TIGR:TC70328
UniParc:UPI00015C76F2	ArrayExpress:VIT_06s0004g04470	EnsemblPlantsGene:VIT_06s0004g04470	EnsemblPlants:VIT_06s0004g04470.t01	unigene:Vvi.7898	RefSeq:XP_002284063
RefSeq:XP_002284063.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:5418191..5420677

Molecular Weight (calculated)

71345.8 Da

IEP (calculated)

4.876

GRAVY (calculated)

-0.409

Length

652 amino acids

Sequence
(BLAST)

001: MAGKGDGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDT ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDSSVQSDI KLWPFKVIAG
101: PGDKPMIVVN YRGEEKQFSA EEISSMVLIK MREIAEAYLG TSIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKHKKDIS GSPRALRRLR TACERAKRTL SSTAQTTIEI DSLFDGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSGVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI NVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIK DEKIGAKLPP EDKKKIEDAI EQAIQWLDAN QLAEADEFED
601: KMKELESLCN PIIAKMYQGS GGGDFGGAMD EDGPSAGGAG GSGAGPKIEE VD

Best Arabidopsis Sequence Match ( AT5G02500.1 )
(BLAST)

001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGEAGGPGAS GMDDDAPPAS GGAGPKIEEV D

Arabidopsis Description

MED37EProbable mediator of RNA polymerase II transcription subunit 37e [Source:UniProtKB/Swiss-Prot;Acc:P22953]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.