Factsheet for VIT_13s0019g01430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04510.t01	Wine grape	cytosol, extracellular	96.0	96.3
VIT_08s0007g00130.t01	Wine grape	cytosol	95.38	95.53
PGSC0003DMT400023039	Potato	cytosol, extracellular	94.46	94.61
Solyc09g010630.2.1	Tomato	extracellular	94.46	94.61
Os11t0703900-01	Rice	extracellular, plasma membrane	93.85	93.99
Os03t0821100-01	Rice	plasma membrane	93.69	93.84
VIT_06s0004g04470.t01	Wine grape	cytosol	94.0	93.71
TraesCS4A01G175100.1	Wheat	cytosol	80.0	93.53
Zm00001d041550_P005	Maize	cytosol	92.62	92.76
EES16191	Sorghum	cytosol	92.46	92.6
Zm00001d030725_P003	Maize	plasma membrane	92.46	92.6
HORVU5Hr1G113180.1	Barley	cytosol	92.15	92.44
GSMUA_Achr7P15160_001	Banana	cytosol	61.38	92.36
TraesCS5D01G492900.2	Wheat	cytosol	92.0	92.28
TraesCS5A01G479300.1	Wheat	golgi	92.0	92.28
TraesCS5B01G492500.1	Wheat	cytosol	91.85	92.13
TraesCS4D01G140800.1	Wheat	cytosol, nucleus	91.85	92.13
TraesCS4B01G142400.1	Wheat	cytosol	91.69	89.09
VIT_11s0037g00510.t01	Wine grape	cytosol	85.69	84.91
VIT_13s0019g00930.t01	Wine grape	cytosol	81.23	79.52
VIT_02s0025g02140.t01	Wine grape	endoplasmic reticulum	62.62	61.02
VIT_16s0098g01580.t01	Wine grape	endoplasmic reticulum	62.46	60.87
VIT_14s0060g02340.t01	Wine grape	endoplasmic reticulum	60.31	60.4
VIT_00s0415g00030.t01	Wine grape	mitochondrion	48.31	46.04
VIT_03s0097g00530.t01	Wine grape	mitochondrion	47.23	45.21
VIT_18s0041g01230.t01	Wine grape	plastid	47.54	44.78
VIT_17s0000g03310.t01	Wine grape	extracellular, plastid	47.38	43.56

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:100254725	wikigene:100254725	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30
Gene3D:3.30.420.40	Gene3D:3.90.640.10	ProteinID:CCB56345	ProteinID:CCB56345.1	ncoils:Coil	UniProt:F6HNX5
EMBL:FN595998	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	EntrezGene:LOC100254725
wikigene:LOC100254725	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036
PANTHER:PTHR19375	PANTHER:PTHR19375:SF308	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	TIGR:TC57559
UniParc:UPI00015C9A6A	ArrayExpress:VIT_13s0019g01430	EnsemblPlantsGene:VIT_13s0019g01430	EnsemblPlants:VIT_13s0019g01430.t01	unigene:Vvi.23541	unigene:Vvi.9086
RefSeq:XP_002283532	RefSeq:XP_002283532.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:+:3014601..3017332

Molecular Weight (calculated)

71174.5 Da

IEP (calculated)

4.911

GRAVY (calculated)

-0.423

Length

650 amino acids

Sequence
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDT ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDASVQSDI KHWSFKVVPG
101: PGDKPMITVT YKGEDKQFAA EEISSMVLIK MREIAEAYLG STVKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKHKKDIT GNARSLRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTIHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IENMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTVK DEKISAKLPP ADKKKIEDAV EQAIQWLDSN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGPDAGAGAM DDDGPSAGGS GAGPKIEEVD

Best Arabidopsis Sequence Match ( AT5G02500.1 )
(BLAST)

001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGEAGGPGAS GMDDDAPPAS GGAGPKIEEV D

Arabidopsis Description

MED37EProbable mediator of RNA polymerase II transcription subunit 37e [Source:UniProtKB/Swiss-Prot;Acc:P22953]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.