Factsheet for VIT_06s0004g04510.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g01430.t01	Wine grape	cytosol	96.3	96.0
VIT_08s0007g00130.t01	Wine grape	cytosol	96.14	95.99
Os11t0703900-01	Rice	extracellular, plasma membrane	95.68	95.53
PGSC0003DMT400023039	Potato	cytosol, extracellular	95.22	95.07
Solyc09g010630.2.1	Tomato	extracellular	95.22	95.07
TraesCS4A01G175100.1	Wheat	cytosol	81.48	94.96
VIT_06s0004g04470.t01	Wine grape	cytosol	95.37	94.79
Os03t0821100-01	Rice	plasma membrane	94.91	94.76
GSMUA_Achr7P15160_001	Banana	cytosol	62.96	94.44
TraesCS4D01G140800.1	Wheat	cytosol, nucleus	94.44	94.44
Zm00001d041550_P005	Maize	cytosol	94.44	94.3
EES16191	Sorghum	cytosol	94.44	94.3
Zm00001d030725_P003	Maize	plasma membrane	94.44	94.3
HORVU5Hr1G113180.1	Barley	cytosol	93.21	93.21
TraesCS5D01G492900.2	Wheat	cytosol	92.9	92.9
TraesCS5A01G479300.1	Wheat	golgi	92.9	92.9
TraesCS5B01G492500.1	Wheat	cytosol	92.75	92.75
TraesCS4B01G142400.1	Wheat	cytosol	94.29	91.33
VIT_11s0037g00510.t01	Wine grape	cytosol	86.27	85.21
VIT_13s0019g00930.t01	Wine grape	cytosol	82.56	80.57
VIT_02s0025g02140.t01	Wine grape	endoplasmic reticulum	63.12	61.32
VIT_16s0098g01580.t01	Wine grape	endoplasmic reticulum	62.96	61.17
VIT_14s0060g02340.t01	Wine grape	endoplasmic reticulum	60.65	60.55
VIT_00s0415g00030.t01	Wine grape	mitochondrion	48.46	46.04
VIT_03s0097g00530.t01	Wine grape	mitochondrion	47.69	45.51
VIT_18s0041g01230.t01	Wine grape	plastid	47.38	44.49
VIT_17s0000g03310.t01	Wine grape	extracellular, plastid	47.38	43.42

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:100253562	wikigene:100253562	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30
Gene3D:3.30.420.40	Gene3D:3.90.640.10	UniProt:A5C0Z3	EMBL:AM478299	ProteinID:CAN81694	ProteinID:CAN81694.1
ProteinID:CCB43583	ProteinID:CCB43583.1	ncoils:Coil	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam
InterPro:IPR029047	InterPro:IPR029048	EntrezGene:LOC100253562	wikigene:LOC100253562	PFAM:PF00012	PRINTS:PR00301
ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF308	SUPFAM:SSF100920
SUPFAM:SSF100934	SUPFAM:SSF53067	TIGR:TC61541	TIGR:TC62058	TIGR:TC63428	UniParc:UPI0001524B92
ArrayExpress:VIT_06s0004g04510	EnsemblPlantsGene:VIT_06s0004g04510	EnsemblPlants:VIT_06s0004g04510.t01	unigene:Vvi.9142	RefSeq:XP_002284008	RefSeq:XP_002284008.1
RefSeq:XP_019076139.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:5470302..5473460

Molecular Weight (calculated)

71238.9 Da

IEP (calculated)

4.914

GRAVY (calculated)

-0.404

Length

648 amino acids

Sequence
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDT ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDSSVQSDI KLWPFKVIPG
101: PGDKPMIVVV YKGEEKQFAA EEISSMVLIK MREIAEAYLG STVKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKHKKDIS GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIK DEKIGAKLTP ADKKKIEDAI DQAIQWLDSN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GPDMGGPMED DVPPASGSGA GPKIEEVD

Best Arabidopsis Sequence Match ( AT5G02500.1 )
(BLAST)

001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGEAGGPGAS GMDDDAPPAS GGAGPKIEEV D

Arabidopsis Description

MED37EProbable mediator of RNA polymerase II transcription subunit 37e [Source:UniProtKB/Swiss-Prot;Acc:P22953]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.