Factsheet for PGSC0003DMT400023039

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010630.2.1	Tomato	extracellular	99.69	99.69
PGSC0003DMT400049441	Potato	cytosol	95.53	95.83
VIT_06s0004g04510.t01	Wine grape	cytosol, extracellular	95.07	95.22
Os11t0703900-01	Rice	extracellular, plasma membrane	94.92	94.92
VIT_13s0019g01430.t01	Wine grape	cytosol	94.61	94.46
KRH19702	Soybean	endoplasmic reticulum	91.53	93.99
TraesCS4A01G175100.1	Wheat	cytosol	80.43	93.88
Os03t0821100-01	Rice	plasma membrane	93.84	93.84
KRH67530	Soybean	endoplasmic reticulum, nucleus	94.14	93.57
EES16191	Sorghum	cytosol	93.53	93.53
Zm00001d041550_P005	Maize	cytosol	93.37	93.37
PGSC0003DMT400001058	Potato	cytosol	93.37	93.37
KRG95806	Soybean	nucleus	93.99	93.27
Zm00001d030725_P003	Maize	plasma membrane	93.22	93.22
PGSC0003DMT400078163	Potato	cytosol	93.07	93.21
GSMUA_Achr7P15160_001	Banana	cytosol	61.79	92.82
TraesCS4D01G140800.1	Wheat	cytosol, nucleus	92.6	92.75
HORVU5Hr1G113180.1	Barley	cytosol	91.99	92.13
TraesCS5D01G492900.2	Wheat	cytosol	91.83	91.98
TraesCS5A01G479300.1	Wheat	golgi	91.83	91.98
TraesCS5B01G492500.1	Wheat	cytosol	91.68	91.82
PGSC0003DMT400071337	Potato	cytosol	91.06	91.06
PGSC0003DMT400001182	Potato	cytosol	91.06	90.64
TraesCS4B01G142400.1	Wheat	cytosol	92.45	89.69
PGSC0003DMT400073713	Potato	cytosol	85.98	87.32
PGSC0003DMT400036856	Potato	cytosol	85.98	85.32
PGSC0003DMT400029104	Potato	cytosol	78.27	82.74
PGSC0003DMT400022442	Potato	cytosol	61.79	82.51
PGSC0003DMT400031937	Potato	extracellular	63.79	62.07
PGSC0003DMT400047710	Potato	endoplasmic reticulum	63.33	61.53
PGSC0003DMT400063543	Potato	endoplasmic reticulum	60.25	58.45
PGSC0003DMT400008101	Potato	mitochondrion	46.69	44.96
PGSC0003DMT400027703	Potato	mitochondrion	46.69	44.76
PGSC0003DMT400064031	Potato	cytosol, plastid	47.0	43.2

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:102580808	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40
Gene3D:3.90.640.10	ProteinID:CAA78036	ProteinID:CAA78036.1	ProteinID:CAA78037	ProteinID:CAA78037.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	UniProt:M1AHN5	PFAM:PF00012
EnsemblPlantsGene:PGSC0003DMG400008917	PGSC:PGSC0003DMG400008917	EnsemblPlants:PGSC0003DMT400023039	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329
ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF323	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067
UniParc:UPI000294AED0	RefSeq:XP_006341042.1	EMBL:Z11984	EMBL:Z11985	SEG:seg	:

Description

Heat shock protein 70 [Source:PGSC_GENE;Acc:PGSC0003DMG400008917]

Coordinates

chr9:-:1958523..1961992

Molecular Weight (calculated)

71241.8 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.422

Length

649 amino acids

Sequence
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVGFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDATVQSDI KHWPFKVIPG
101: PGDKPMIVVN YKGEEKQFAA EEISSMVLIK MREIAEAFLG STVKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVTHFVQE FKRKNKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKNSIHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEDHKK KVEAKNALEN YAYNMRNTIK DEKIASKLPE ADRKKIEEAI EQAIQWLDAN QLAESDEFED
601: KMKELESICN PIIAKMYQGA GGDMGADMGD DGPAPSGGSG AGPKIEEVD

Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD

Arabidopsis Description

MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.