Factsheet for PGSC0003DMT400071337

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g011440.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	98.92	98.62
KRH24810	Soybean	nucleus	94.14	94.14
KRH29811	Soybean	nucleus	93.84	93.84
PGSC0003DMT400001058	Potato	cytosol	92.91	92.91
PGSC0003DMT400049441	Potato	cytosol	92.6	92.89
PGSC0003DMT400001182	Potato	cytosol	92.6	92.18
PGSC0003DMT400078163	Potato	cytosol	91.53	91.67
PGSC0003DMT400023039	Potato	cytosol, extracellular	91.06	91.06
Os03t0277300-01	Rice	plastid	90.14	89.59
EER92466	Sorghum	cytosol	89.98	89.57
Zm00001d047799_P002	Maize	cytosol, extracellular, plasma membrane, plastid	89.83	89.42
HORVU4Hr1G059260.1	Barley	cytosol	90.29	89.19
TraesCS4B01G205700.1	Wheat	cytosol, golgi	90.14	89.04
TraesCS4D01G206600.1	Wheat	cytosol	89.98	88.89
TraesCS4A01G098600.1	Wheat	cytosol	90.14	87.44
PGSC0003DMT400073713	Potato	cytosol	85.52	86.85
PGSC0003DMT400036856	Potato	cytosol	87.21	86.54
PGSC0003DMT400029104	Potato	cytosol	79.82	84.36
PGSC0003DMT400022442	Potato	cytosol	61.79	82.51
PGSC0003DMT400031937	Potato	extracellular	64.25	62.52
PGSC0003DMT400047710	Potato	endoplasmic reticulum	63.79	61.98
PGSC0003DMT400063543	Potato	endoplasmic reticulum	60.25	58.45
PGSC0003DMT400008101	Potato	mitochondrion	47.61	45.85
PGSC0003DMT400027703	Potato	mitochondrion	47.77	45.79
PGSC0003DMT400064031	Potato	cytosol, plastid	47.15	43.34

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:102588449	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40
Gene3D:3.90.640.10	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048
UniProt:M1CNK7	PFAM:PF00012	EnsemblPlantsGene:PGSC0003DMG400027750	PGSC:PGSC0003DMG400027750	EnsemblPlants:PGSC0003DMT400071337	PRINTS:PR00301
ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF323	SUPFAM:SSF100920
SUPFAM:SSF100934	SUPFAM:SSF53067	UniParc:UPI0002968076	RefSeq:XP_006365705.1	SEG:seg	:

Description

Hsc70 [Source:PGSC_GENE;Acc:PGSC0003DMG400027750]

Coordinates

chr4:+:7034956..7037871

Molecular Weight (calculated)

71236.7 Da

IEP (calculated)

4.808

GRAVY (calculated)

-0.428

Length

649 amino acids

Sequence
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDT ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR FSDPSVQSDM KLWPFKVIPG
101: PADKPMIVVN YKGEEKEFSA EEISSMVLIK MKEIAEAFLG ITIKNAVVTV PAYFNDSQRQ ATKDAGTISG LNVMRIINEP TAAAIAYGLD KKSSSTGEKT
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKHKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KIDKSGVHDI VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTRDNN LLGKFELTGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAER YKAEDEEHKK KVEAKNALEN YAYNMRNTIK DDKIASKLSP EEKQKIEDSV EQAIQWLDGN QLAEADEFED
601: KMKELESICN PIIAKMYQGG ADMAGGMDED GPSAGASGAG AGPKIEEVD

Best Arabidopsis Sequence Match ( AT5G02500.1 )
(BLAST)

001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGEAGGPGAS GMDDDAPPAS GGAGPKIEEV D

Arabidopsis Description

MED37EProbable mediator of RNA polymerase II transcription subunit 37e [Source:UniProtKB/Swiss-Prot;Acc:P22953]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.