Factsheet for PGSC0003DMT400001058

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117
extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049441	Potato	cytosol	94.76	95.05
PGSC0003DMT400078163	Potato	cytosol	94.45	94.6
PGSC0003DMT400023039	Potato	cytosol, extracellular	93.37	93.37
PGSC0003DMT400071337	Potato	cytosol	92.91	92.91
Solyc11g066060.1.1	Tomato	extracellular, nucleus, unclear	98.77	91.83
PGSC0003DMT400001182	Potato	cytosol	92.14	91.72
PGSC0003DMT400073713	Potato	cytosol	85.52	86.85
PGSC0003DMT400036856	Potato	cytosol	86.44	85.78
PGSC0003DMT400029104	Potato	cytosol	78.89	83.39
PGSC0003DMT400022442	Potato	cytosol	61.79	82.51
PGSC0003DMT400031937	Potato	extracellular	63.64	61.92
PGSC0003DMT400047710	Potato	endoplasmic reticulum	63.64	61.83
PGSC0003DMT400063543	Potato	endoplasmic reticulum	60.09	58.3
PGSC0003DMT400008101	Potato	mitochondrion	47.0	45.25
PGSC0003DMT400027703	Potato	mitochondrion	47.0	45.05
PGSC0003DMT400064031	Potato	cytosol, plastid	47.15	43.34

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:102593249	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40
Gene3D:3.90.640.10	ProteinID:CAA78036	ProteinID:CAA78036.1	ProteinID:CAA78037	ProteinID:CAA78037.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	UniProt:M0ZHT9	PFAM:PF00012
EnsemblPlantsGene:PGSC0003DMG400000398	PGSC:PGSC0003DMG400000398	EnsemblPlants:PGSC0003DMT400001058	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329
ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF323	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067
UniParc:UPI000294BFCC	RefSeq:XP_006348998.1	EMBL:Z11984	EMBL:Z11985	SEG:seg	:

Description

Heat shock protein 70-3 [Source:PGSC_GENE;Acc:PGSC0003DMG400000398]

Coordinates

chr11:+:38717622..38720374

Molecular Weight (calculated)

71203.6 Da

IEP (calculated)

4.839

GRAVY (calculated)

-0.417

Length

649 amino acids

Sequence
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVGFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDASVQSDI KLWPFKVTPG
101: PGDKPMIVVN YKGEEKQFSA EEISSMVLIK MKEIAEAFLG STVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKHKKDII GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGVDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTIHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAER YKAEDEEHKK KVEAKNALEN YSYNMRNTIK DDKISSKLSA EDKKKIEDAI DQAISWLDSN QLAEADEFED
601: KMKELESLCN PIIAKMYQGA GGEAGAPMDD DDAPPAGSTG AGPKIEEVD

Best Arabidopsis Sequence Match ( AT5G02500.1 )
(BLAST)

001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGEAGGPGAS GMDDDAPPAS GGAGPKIEEV D

Arabidopsis Description

MED37EProbable mediator of RNA polymerase II transcription subunit 37e [Source:UniProtKB/Swiss-Prot;Acc:P22953]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.