Factsheet for PGSC0003DMT400064031

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103450.2.1	Tomato	plastid	98.87	99.29
KRH06058	Soybean	mitochondrion	88.1	90.28
VIT_17s0000g03310.t01	Wine grape	extracellular, plastid	90.23	90.1
CDY34275	Canola	cytosol	79.04	89.28
CDY08914	Canola	cytosol	78.47	89.21
CDY24832	Canola	cytosol	78.9	89.12
Os05t0303000-01	Rice	plastid	57.51	88.45
CDY11007	Canola	cytosol	77.9	88.42
Bra002461.1-P	Field mustard	cytosol	66.01	87.76
GSMUA_Achr6P28370_001	Banana	plastid	79.46	87.38
GSMUA_Achr9P07750_001	Banana	plastid	79.46	87.25
Zm00001d013507_P001	Maize	plastid	83.99	86.82
KXG37805	Sorghum	plastid	83.57	86.51
TraesCS1D01G131800.1	Wheat	plastid	83.14	86.07
Zm00001d033591_P001	Maize	plastid	83.14	85.94
TraesCS1A01G133100.2	Wheat	golgi	83.0	85.67
TraesCS1B01G151300.1	Wheat	plastid	83.0	85.42
AT4G24280.1	Thale cress	plastid	85.69	84.26
Bra013786.1-P	Field mustard	plastid	84.7	84.11
CDX92631	Canola	plastid	84.28	84.04
AT5G49910.1	Thale cress	plastid	85.41	83.98
Bra010498.1-P	Field mustard	plastid	85.13	83.82
Bra019231.1-P	Field mustard	plastid	84.28	83.8
CDY03462	Canola	plastid	84.42	83.71
CDY03461	Canola	plastid	77.76	77.22
HORVU1Hr1G030790.1	Barley	plastid	82.58	74.74
CDY03459	Canola	cytosol	64.87	69.18
PGSC0003DMT400008101	Potato	mitochondrion	48.87	51.19
PGSC0003DMT400027703	Potato	mitochondrion	48.02	50.07
PGSC0003DMT400022442	Potato	cytosol	34.14	49.59
PGSC0003DMT400029104	Potato	cytosol	41.5	47.72
PGSC0003DMT400078163	Potato	cytosol	43.34	47.22
PGSC0003DMT400001058	Potato	cytosol	43.34	47.15
PGSC0003DMT400071337	Potato	cytosol	43.34	47.15
PGSC0003DMT400049441	Potato	cytosol	43.2	47.14
PGSC0003DMT400023039	Potato	cytosol, extracellular	43.2	47.0
PGSC0003DMT400031937	Potato	extracellular	44.33	46.93
PGSC0003DMT400047710	Potato	endoplasmic reticulum	44.05	46.56
PGSC0003DMT400073713	Potato	cytosol	41.93	46.32
PGSC0003DMT400001182	Potato	cytosol	42.63	46.17
PGSC0003DMT400036856	Potato	cytosol	41.78	45.11
PGSC0003DMT400063543	Potato	endoplasmic reticulum	41.64	43.95
GSMUA_Achr6P12370_001	Banana	plastid	79.04	42.69

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:102588246	MapMan:19.1.4.1	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10
InterPro:Chaperone_DnaK	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	UniProt:M1CBM0
HAMAP:MF_00332	PFAM:PF00012	EnsemblPlantsGene:PGSC0003DMG400024887	PGSC:PGSC0003DMG400024887	EnsemblPlants:PGSC0003DMT400064031	PRINTS:PR00301
ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF332	SUPFAM:SSF100920
SUPFAM:SSF100934	SUPFAM:SSF53067	TIGRFAMs:TIGR02350	UniParc:UPI0002965C20	RefSeq:XP_006349319.1	SEG:seg

Description

Chloroplast heat shock protein 70-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400024887]

Coordinates

chr1:+:80158423..80162913

Molecular Weight (calculated)

75152.9 Da

IEP (calculated)

4.904

GRAVY (calculated)

-0.322

Length

706 amino acids

Sequence
(BLAST)

001: MASSTAQIHA LGATYFANSS SSTRKPSKSV FLGQKLNNRT LAFGLKQKKS SSSRGNNGGY APMRVVAEKV VGIDLGTTNS AVAAMEGGKP TIVTNAEGQR
101: TTPSVVAYTK SGDRLVGQIA KRQAVVNPEN TFFSVKRFIG RKMNEVDEES KQVSYNVIRD ENGNVKLDCP AIGKSFAAEE ISAQVLRKLV DDASKFLNDK
201: VSKAVVTVPA YFNDSQRTAT KDAGRIAGLE VLRIINEPTA ASLAYGFEKK SNETILVFDL GGGTFDVSVL EVGDGVFEVL STSGDTHLGG DDFDKRIVDW
301: LAASFKRDEG IDLLKDKQAL QRLTETAEKA KMELSSLTQT NISLPFITAT ADGPKHIETT ITRGKFEELC SDLLDRLKTP VQNSLRDAKL SFSDIDEVIL
401: VGGSTRIPAV QELVKKLTGK DPNVTVNPDE VVALGAAVQA GVLAGDVSDI VLLDVAPLSI GLETLGGVMT KIIPRNTTLP TSKSEVFSTA ADGQTSVEIN
501: VLQGEREFVR DNKSLGSFRL DGIPPAPRGV PQIEVKFDID ANGILSVTAI DKGTGKKQDI TITGASTLPG DEVERMVKEA ERFAQEDKEK RDAIDTKNQA
601: DSVVYQTEKQ LKELGDKVPG PVKEKVEAKL GELKEAISGG STQTMKDAMA ALNQEVMQLG QSLYNQPGAA PGAGPAPGSS DGPSESSSGK GPDGDDVIDA
701: DFTDSK

Best Arabidopsis Sequence Match ( AT5G49910.1 )
(BLAST)

001: MASSAAQIHI LGGIGFPTSS SSSSTKNLDN KTNSIPRSVF FGNRTSPFTT PTSAFLRMGR RNNNASRYTV GPVRVVNEKV VGIDLGTTNS AVAAMEGGKP
101: TIVTNAEGQR TTPSVVAYTK SKDRLVGQIA KRQAVVNPEN TFFSVKRFIG RRMNEVAEES KQVSYRVIKD ENGNVKLDCP AIGKQFAAEE ISAQVLRKLV
201: DDASRFLNDK VTKAVITVPA YFNDSQRTAT KDAGRIAGLE VLRIINEPTA ASLAYGFERK SNETILVFDL GGGTFDVSVL EVGDGVFEVL STSGDTHLGG
301: DDFDKRVVDW LASTFKKDEG IDLLKDKQAL QRLTEAAEKA KIELSSLTQT NMSLPFITAT ADGPKHIETT LTRGKFEELC SDLLDRVRTP VENSLRDAKL
401: SFKDIDEVIL VGGSTRIPAV QDLVRKLTGK EPNVSVNPDE VVALGAAVQA GVLSGDVSDI VLLDVTPLSL GLETLGGVMT KIIPRNTTLP TSKSEVFSTA
501: ADGQTSVEIN VLQGEREFVR DNKSIGSFRL DGIPPAPRGV PQIEVKFDID ANGILSVSAS DKGTGKKQDI TITGASTLPK DEVDTMVQEA ERFAKEDKEK
601: RDAIDTKNQA DSVVYQTEKQ LKELGEKIPG PVKEKVEAKL QELKEKIASG STQEIKDTMA ALNQEVMQIG QSLYNQPQPG GADSPPGGEA SSSSDTSSSA
701: KGGDNGGDVI DADFTDSN

Arabidopsis Description

HSP70-7Heat shock 70 kDa protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LTX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.