Factsheet for PGSC0003DMT400063543

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 10
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023249

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09080.1	PGSC0003DMT400023249	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099660.2.1	Tomato	extracellular	97.76	97.76
VIT_14s0060g02340.t01	Wine grape	endoplasmic reticulum	78.33	80.74
CDY22648	Canola	cytosol	71.6	79.17
Bra031657.1-P	Field mustard	endoplasmic reticulum	76.08	75.63
PGSC0003DMT400047710	Potato	endoplasmic reticulum	75.19	75.3
PGSC0003DMT400031937	Potato	extracellular	74.89	75.11
CDY06347	Canola	endoplasmic reticulum	72.05	75.08
AT1G09080.1	Thale cress	endoplasmic reticulum	75.34	74.67
Os03t0710500-00	Rice	extracellular, plasma membrane	71.6	71.6
EER93587	Sorghum	endoplasmic reticulum	70.85	70.12
PGSC0003DMT400073713	Potato	cytosol	59.04	61.82
PGSC0003DMT400001182	Potato	cytosol	59.49	61.04
PGSC0003DMT400029104	Potato	cytosol	55.9	60.91
PGSC0003DMT400036856	Potato	cytosol	59.04	60.4
PGSC0003DMT400022442	Potato	cytosol	43.8	60.29
PGSC0003DMT400049441	Potato	cytosol	58.3	60.28
PGSC0003DMT400023039	Potato	cytosol, extracellular	58.45	60.25
PGSC0003DMT400071337	Potato	cytosol	58.45	60.25
PGSC0003DMT400001058	Potato	cytosol	58.3	60.09
PGSC0003DMT400078163	Potato	cytosol	58.15	60.03
PGSC0003DMT400027703	Potato	mitochondrion	47.38	46.82
PGSC0003DMT400008101	Potato	mitochondrion	46.49	46.14
PGSC0003DMT400064031	Potato	cytosol, plastid	43.95	41.64

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:102604599	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	UniProt:M1CAS5
PFAM:PF00012	EnsemblPlantsGene:PGSC0003DMG400024707	PGSC:PGSC0003DMG400024707	EnsemblPlants:PGSC0003DMT400063543	PRINTS:PR00301	ScanProsite:PS00297
ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF215	SUPFAM:SSF100920	SUPFAM:SSF100934
SUPFAM:SSF53067	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002965164	RefSeq:XP_006344666.1	SEG:seg

Description

Luminal binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024707]

Coordinates

chr1:+:77390827..77394253

Molecular Weight (calculated)

74683.1 Da

IEP (calculated)

5.072

GRAVY (calculated)

-0.500

Length

669 amino acids

Sequence
(BLAST)

001: MRMRRSKDFK NLAFLILLLF ASEFCLGVTV AAEKKQKQNL GTVIGIDLGT TYSCVGVYKG ENNVEIIAND QGNRITPSWV AFTDTERLIG EAAKNQAALN
101: PERTIYDVKR LIGRKFDDPE VQKIIKMLPF NIVNKDGKPY VEVKIKEGDV KVFSPEEISA MILQKMKETA EAYLGKSIKH AVITVPAYFN DAQRQATKDA
201: GTIAGLNVVR IINEPTAAAI AYGLDKKGKE QNILVYDLGG GTFDVSILSI DNGVFEVLAT NGNTHLGGED FDHKLMDYFI KLIKRKYSKD ISNDKKALGK
301: LRRECERAKR ALSNQHQVRI EIESLFDGID FSEPLTRARF EELNMDLFKK TMGPVKKALE DANLKKTDID ELVLVGGSTR IPKVQQLLKD FFDGKEPNKG
401: VNPDEAVAYG AAIQGAILGG EGGEETKDLL LLDVTPLSLG IETVGGVMTK LIPRNSRIPV KKTQVFTTYQ DQQTSVTIKV YEGERSLTKD CRELGSFDLS
501: GIPPAPRGVP QIEVTFQVDE NGILHVTAQD KAAKKSKSIT ITSDKSRLSQ EEIDRMLKEA EEFAEEDRKV KEKVDAQNKL ETYIYNMKNT INDKLAEKID
601: SDDKKKIENA LKEATEWLDD NQNAEKEDYD EKMKDLEDVC NPVIKKVYEK SGASSANSGD EEEEAYDEL

Best Arabidopsis Sequence Match ( AT5G28540.1 )
(BLAST)

001: MARSFGANST VVLAIIFFGC LFALSSAIEE ATKLGSVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVGFTDSER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRVME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDFSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLNGIPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVNDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GGAGGESSTE EEDESHDEL

Arabidopsis Description

MED37AMediator of RNA polymerase II transcription subunit 37a [Source:UniProtKB/Swiss-Prot;Acc:Q9LKR3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.