Factsheet for AT1G09080.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 5
extracellular 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22648	Canola	cytosol	82.67	92.23
Bra031657.1-P	Field mustard	endoplasmic reticulum	89.19	89.45
CDY06347	Canola	endoplasmic reticulum	84.44	88.78
VIT_14s0060g02340.t01	Wine grape	endoplasmic reticulum	77.78	80.89
AT5G28540.1	Thale cress	endoplasmic reticulum	77.04	77.73
AT5G42020.3	Thale cress	endoplasmic reticulum	76.3	76.52
PGSC0003DMT400063543	Potato	endoplasmic reticulum	74.67	75.34
Solyc01g099660.2.1	Tomato	extracellular	74.67	75.34
Os03t0710500-00	Rice	extracellular, plasma membrane	71.26	71.9
EER93587	Sorghum	endoplasmic reticulum	71.11	71.01
AT1G56410.1	Thale cress	cytosol	55.7	60.94
AT3G09440.2	Thale cress	cytosol	58.52	60.86
AT1G16030.1	Thale cress	cytosol	58.22	60.84
AT3G12580.1	Thale cress	cytosol	58.22	60.46
AT5G02500.1	Thale cress	cytosol	57.63	59.75
AT5G02490.1	Thale cress	cytosol	57.19	59.11
AT5G09590.1	Thale cress	mitochondrion	46.81	46.33
AT4G37910.1	Thale cress	mitochondrion	46.07	45.6
AT4G24280.1	Thale cress	plastid	45.19	42.48
AT5G49910.1	Thale cress	plastid	44.89	42.2

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	EntrezGene:837429
ProteinID:AAB70400.1	ProteinID:AEE28392.1	ProteinID:AEE28393.1	ArrayExpress:AT1G09080	EnsemblPlantsGene:AT1G09080	RefSeq:AT1G09080
TAIR:AT1G09080	RefSeq:AT1G09080-TAIR-G	EnsemblPlants:AT1G09080.1	TAIR:AT1G09080.1	EMBL:AY156728	Unigene:At.42242
Symbol:BIP3	ncoils:Coil	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005737	GO:GO:0005783	GO:GO:0005788	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009856	GO:GO:0009860
GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0016592	GO:GO:0030154	GO:GO:0040007
InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048
RefSeq:NP_001184944.1	RefSeq:NP_172382.4	PFAM:PF00012	PO:PO:0000013	PO:PO:0000293	PO:PO:0001017
PO:PO:0001054	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009025	PO:PO:0009029
PO:PO:0009031	PO:PO:0009032	PO:PO:0009047	PO:PO:0020030	PO:PO:0025022	PO:PO:0025195
PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF215
UniProt:Q8H1B3	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	TMHMM:TMhelix	UniParc:UPI00000ADAB4
SEG:seg	:	:	:	:	:

Description

MED37BProbable mediator of RNA polymerase II transcription subunit 37b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1B3]

Coordinates

chr1:-:2929217..2931841

Molecular Weight (calculated)

75153.7 Da

IEP (calculated)

4.677

GRAVY (calculated)

-0.443

Length

675 amino acids

Sequence
(BLAST)

001: MIFIKENTAK MTRNKAIACL VFLTVLDFLM NIGAALMSSL AIEGEEQKLG TVIGIDLGTT YSCVGVYHNK HVEIIANDQG NRITPSWVAF TDTERLIGEA
101: AKNQAAKNPE RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ
201: RQATKDAGAI AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK
301: DHKALGKLRR ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD
401: GKEPSKGTNP DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE
501: LGKFDLTGIL PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD
601: KEKLAKKISD EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.