Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 10
- vacuole 5
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g079610.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09080.1 | Solyc01g079610.2.1 | AT3G62600.1 | 19763086 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400063543 | Potato | endoplasmic reticulum | 97.76 | 97.76 |
| VIT_14s0060g02340.t01 | Wine grape | endoplasmic reticulum | 78.33 | 80.74 |
| CDY22648 | Canola | cytosol | 71.6 | 79.17 |
| Solyc03g082920.2.1 | Tomato | nucleus, plastid | 75.49 | 75.71 |
| Bra031657.1-P | Field mustard | endoplasmic reticulum | 75.93 | 75.48 |
| Solyc08g082820.2.1 | Tomato | extracellular | 74.89 | 75.23 |
| Solyc06g052050.2.1 | Tomato | endoplasmic reticulum, nucleus, unclear | 69.36 | 74.96 |
| CDY06347 | Canola | endoplasmic reticulum | 71.9 | 74.92 |
| AT1G09080.1 | Thale cress | endoplasmic reticulum | 75.34 | 74.67 |
| Os03t0710500-00 | Rice | extracellular, plasma membrane | 71.9 | 71.9 |
| EER93587 | Sorghum | endoplasmic reticulum | 71.15 | 70.41 |
| Solyc10g086410.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, nucleus, unclear | 58.3 | 60.56 |
| Solyc07g005820.2.1 | Tomato | cytosol | 59.19 | 60.55 |
| Solyc11g066100.1.1 | Tomato | cytosol, unclear | 59.19 | 60.55 |
| Solyc09g010630.2.1 | Tomato | extracellular | 58.59 | 60.4 |
| Solyc04g011440.2.1 | Tomato | cytosol, extracellular, nucleus, plastid, unclear | 58.59 | 60.22 |
| Solyc03g117630.1.1 | Tomato | cytosol | 58.74 | 60.09 |
| Solyc06g076020.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 58.15 | 60.03 |
| Solyc11g066060.1.1 | Tomato | extracellular, nucleus, unclear | 58.45 | 56.02 |
| Solyc01g106260.2.1 | Tomato | plastid | 46.49 | 46.42 |
| Solyc01g106210.2.1 | Tomato | plastid | 47.09 | 46.26 |
| Solyc11g020040.1.1 | Tomato | plastid | 45.44 | 43.93 |
| Solyc01g103450.2.1 | Tomato | plastid | 44.69 | 42.53 |
Protein Annotations
| Gene3D:1.20.1270.10 | Gene3D:2.60.34.10 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | MapMan:35.1 | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:HSP70_C_sf | InterPro:HSP70_peptide-bd_sf |
| InterPro:Heat_shock_70_CS | InterPro:Hsp_70_fam | InterPro:IPR029047 | InterPro:IPR029048 | UniProt:K4B100 | PFAM:PF00012 |
| PRINTS:PR00301 | ScanProsite:PS00297 | ScanProsite:PS00329 | ScanProsite:PS01036 | PANTHER:PTHR19375 | PANTHER:PTHR19375:SF215 |
| SUPFAM:SSF100920 | SUPFAM:SSF100934 | SUPFAM:SSF53067 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc01g099660.2 | EnsemblPlants:Solyc01g099660.2.1 |
| TMHMM:TMhelix | UniParc:UPI0002768F60 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1:+:89839013..89842124
Molecular Weight (calculated)
74646.0 Da
IEP (calculated)
5.122
GRAVY (calculated)
-0.507
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMRRSKNFK NLAFLILLLF ASEFCLGVTV AAEKKQKQNL GTVIGIDLGT TYSCVGVYKG ENNVEIIAND QGNRITPSWV AFTDTERLIG EAAKNQAALN
101: PERTIYDVKR LIGRKFDDPE VQKIIKMLPF NVVNKAGKPH VEVKIKEGDV KVFSPEEISA MILQKMKETA EAYLGKSIKH AVITVPAYFN DAQRQATKDA
201: GTIAGLNVVR IINEPTAAAI AYGLDKKGKE QNILVYDLGG GTFDVSILSI DNGVFEVLAT NGNTHLGGED FDHKLMDYFI KLIKRKYSKD ISSDKKALGK
301: LRRECERAKR ALSNQHQVRI EIESLFDGVD FSEPLTRARF EELNMDLFKK TMGPVKKALE DANLKKTDID ELVLVGGSTR IPKVQQLLKD FFDGKEPNKG
401: VNPDEAVAYG AAIQGAILGG EGGEETKDLL LLDVTPLSLG IETVGGVMTK LIPRNSRIPT KKTQVFTTYQ DQQTSVTIKV YEGERSLTKD CRELGSFDLS
501: GIPPAPRGVP QIEVTFQVDE NGILHVTAQD KAAKKSKSIT ITSDKSRLSQ EEIDRMLKEA EEFAEEDRKV REKVDAQNKL ETYIYNMKNT INDKLAEKID
601: SDDREKIESA LKEATEWLDD NQNAEKQDYD EKMKDLEDVC NPVIKKVYEK SGGSTENSGD EEEEAYDEL
101: PERTIYDVKR LIGRKFDDPE VQKIIKMLPF NVVNKAGKPH VEVKIKEGDV KVFSPEEISA MILQKMKETA EAYLGKSIKH AVITVPAYFN DAQRQATKDA
201: GTIAGLNVVR IINEPTAAAI AYGLDKKGKE QNILVYDLGG GTFDVSILSI DNGVFEVLAT NGNTHLGGED FDHKLMDYFI KLIKRKYSKD ISSDKKALGK
301: LRRECERAKR ALSNQHQVRI EIESLFDGVD FSEPLTRARF EELNMDLFKK TMGPVKKALE DANLKKTDID ELVLVGGSTR IPKVQQLLKD FFDGKEPNKG
401: VNPDEAVAYG AAIQGAILGG EGGEETKDLL LLDVTPLSLG IETVGGVMTK LIPRNSRIPT KKTQVFTTYQ DQQTSVTIKV YEGERSLTKD CRELGSFDLS
501: GIPPAPRGVP QIEVTFQVDE NGILHVTAQD KAAKKSKSIT ITSDKSRLSQ EEIDRMLKEA EEFAEEDRKV REKVDAQNKL ETYIYNMKNT INDKLAEKID
601: SDDREKIESA LKEATEWLDD NQNAEKQDYD EKMKDLEDVC NPVIKKVYEK SGGSTENSGD EEEEAYDEL
001: MARSFGANST VVLAIIFFGC LFALSSAIEE ATKLGSVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVGFTDSER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRVME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDFSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLNGIPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVNDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GGAGGESSTE EEDESHDEL
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRVME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDFSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLNGIPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVNDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GGAGGESSTE EEDESHDEL
Arabidopsis Description
MED37AMediator of RNA polymerase II transcription subunit 37a [Source:UniProtKB/Swiss-Prot;Acc:Q9LKR3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.